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Papers per year
Papers 102
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pyBiodatafuse: extending interoperability of data using modular queries across biomedical resources2026 Bioinformatics article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Yojana Gadiya, Javier Millán Acosta, Ammar Ammar, Alejandro Adriaque Lozano, Delano Wetstede, Dominik Martinát, +4 more
2citations -
Exploring pathway interactions to detect molecular mechanisms of disease: 22q11.2 deletion syndrome2023 Orphanet Journal of Rare Diseases article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Woosub Shin, Martina Kutmon, Eleni Mina, Thérèse van Amelsvoort, Chris T. Evelo, Friederike Ehrhart
2citations -
Integrative analysis of multi-omics data reveals importance of collagen and the PI3K AKT signalling pathway in CAKUT2024 Scientific Reports article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Jumamurat R. Bayjanov, Cenna Doornbos, Ozan Özışık, Woosub Shin, Núria Queralt-Rosiñach, Daphne Wijnbergen, +9 more
2citations -
KidneyNetwork: Using kidney-derived gene expression data to predict and prioritize novel genes involved in kidney disease2022 Research Square preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Floranne Boulogne, Laura R. Claus, Henry H. Wiersma, Roy Oelen, Floor Schukking, Niek de Klein, +15 more
2citations -
A comprehensive and centralized database for exploring omics data in Autoimmune Diseases2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Jordi Martorell‐Marugán, Raúl López-Domínguez, Adrián García-Moreno, Daniel Toro Dominguez, Juan Antonio Villatoro-García, Guillermo Barturen, +10 more
1citations -
Plant PhysioSpace: a robust tool to compare stress response across plant species2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Ali Hadizadeh Esfahani, Janina Maß, Asis Hallab, Bernhard Schuldt, David Nevarez, Björn Usadel, +3 more
1citations -
A collaborative network analysis for the interpretation of transcriptomics data in Huntington’s disease2025 Scientific Reports article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Ozan Özışık, Nazli Sila Kara, Tooba Abbassi‐Daloii, Morgane Térézol, Elsa C. Kuijper, Núria Queralt-Rosiñach, +7 more
1citations -
The Need for a Systems Biology Approach in Cancer Explained2025 International Journal of Molecular Sciences article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Hehuan Zhu, Xi Zhang, Ehsan Nazemalhosseini-Mojarad, Jessica P Roelands, Lysanne D. A. N. de Muynck, Cor J. Ravensbergen, +7 more
1citations -
Utilizing gene co-expression networks with the rat kidney TXG-MAPr tool to enhance safety assessment, biomarker identification and human translation2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Steven J. Kunnen, Giulia Callegaro, Jeffrey J. Sutherland, Panuwat Trairatphisan, Hugo W van Kessel, Lukas S. Wijaya, +11 more
1citations -
NetTDP: permutation-based true discovery proportions for differential co-expression network analysis2022 Briefings in Bioinformatics article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Menglan Cai, Anna Vesely, Xu Chen, Limin Li, Jelle J. Goeman
1citations -
Exploring Pathway Interactions to Detect Molecular Mechanisms of Disease: 22q11.2 Deletion Syndrome2022 Research Square preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Woosub Shin, Martina Kutmon, Eleni Mina, Thérèse van Amelsvoort, Chris T. Evelo, Friederike Ehrhart
1citations -
Editorial: Multi-omics data integration: key to thoroughly understanding the immune system2023 Frontiers in Cell and Developmental Biology editorial Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Cristina Jiménez, María Hernández‐Sánchez, Jacques J. M. van Dongen, Paula Díez
1citations
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