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Biomedical Text Mining and Ontologies Sign in to save
Papers per year
Papers 205
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The GA4GH Phenopacket schema defines a computable representation of clinical data2022 Nature Biotechnology article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Julius O.B. Jacobsen, Michael Baudis, Gareth S Baynam, J. Beckmann, Sergi Beltrán, Orion J. Buske, +60 more
117citations -
A Simple Standard for Sharing Ontological Mappings (SSSOM)2022 Database article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Nicolas Matentzoglu, James P. Balhoff, Susan M. Bello, Chris Bizon, Matthew Brush, Tiffany J. Callahan, +35 more
89citations -
Semantic modelling of common data elements for rare disease registries, and a prototype workflow for their deployment over registry data2022 Journal of Biomedical Semantics article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Rajaram Kaliyaperumal, Mark D. Wilkinson, Pablo Alarcón Moreno, Nirupama Benis, Ronald Cornet, Bruna dos Santos Vieira, +13 more
48citations -
Curation and expansion of Human Phenotype Ontology for defined groups of inborn errors of immunity2021 Journal of Allergy and Clinical Immunology article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Matthias Haimel, Júlia Pázmándi, Raúl Jiménez Heredia, Jasmin Dmytrus, Sevgi Köstel Bal, Samaneh Zoghi, +32 more
33citations -
Mondo: integrating disease terminology across communities2025 Genetics article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Nicole Vasilevsky, Sabrina Toro, Nicolas Matentzoglu, Joseph E Flack, Kathleen R. Mullen, Harshad Hegde, +88 more
28citations -
The use of foundational ontologies in biomedical research2023 Journal of Biomedical Semantics article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
César H. Bernabé, Núria Queralt-Rosiñach, Vítor E. Silva Souza, Luiz Olavo Bonino da Silva Santos, Barend Mons, Annika Jacobsen, +1 more
24citations -
Automating Clinical Chart Review: An Open-Source Natural Language Processing Pipeline Developed on Free-Text Radiology Reports From Patients With Glioblastoma2020 JCO Clinical Cancer Informatics article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies
Joeky T. Senders, Logan D. Cho, Paola Calvachi, John J. McNulty, Joanna L. Ashby, Isabelle S. Schulte, +6 more
19citations -
Deep Learning-based detection of psychiatric attributes from German mental health records2022 International Journal of Medical Informatics article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Sumit Madan, Fabian Julius Zimmer, Helena Balabin, Sebastian Schaaf, Holger Fröhlich, Juliane Fluck, +4 more
18citations -
The GA4GH Phenopacket schema: A computable representation of clinical data for precision medicine2021 medRxiv preprint Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Julius O.B. Jacobsen, Michael Baudis, Gareth S Baynam, J. Beckmann, Sergi Beltrán, Tiffany J. Callahan, +41 more
14citations -
Semantic modelling of Common Data Elements for Rare Disease registries, and a prototype workflow for their deployment over registry data2021 medRxiv preprint Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Rajaram Kaliyaperumal, Mark D. Wilkinson, Pablo Alarcón Moreno, Nirupama Benis, Ronald Cornet, Bruna dos Santos Vieira, +12 more
9citations -
How do others cope? Extracting coping strategies for adverse drug events from social media2022 Journal of Biomedical Informatics article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Anne R. Dirkson, Suzan Verberne, G. van Oortmerssen, Hans A. J. Gelderblom, Wessel Kraaij
8citations -
The Cell Ontology in the age of single-cell omics2026 eScholarship (California Digital Library) article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Shawn Zheng Kai Tan, Aleix Puig-Barbe, Damien Goutte-Gattat, Caroline Eastwood, Brian Aevermann, Alida Avola, +29 more
5citations -
CDE-Mapper: Using retrieval-augmented language models for linking clinical data elements to controlled vocabularies2025 Computers in Biology and Medicine article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Komal Gilani, Marlo Verket, Michel J. Dumontier, Hans‐Peter Brunner‐La Rocca, Visara Urovi
4citations -
Mapping OHDSI OMOP Common Data Model and GA4GH Phenopackets for COVID-19 disease epidemics and analytics2022 preprint Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Núria Queralt-Rosiñach, Pablo Alarcón Moreno, Tiffany J. Callahan, Giovanni Delussu, Charlotte Fraboulet, Leyla Jael Castro, +7 more
4citations -
Improving the Quality of Unstructured Cancer Data Using Large Language Models: A German Oncological Case Study2024 Studies in health technology and informatics book-chapter Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Yongli Mou, J. Lehmkuhl, Nicolas Sauerbrunn, Anja Köchel, Jens Panse, Daniel Truh, +3 more
3citations
Most active Aachen authors
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Charles Tapley Hoyt 2 citations overall132 papers
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Núria Queralt-Rosiñach 5,889 citations overall17 papers
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Marco Roos 23,445 citations overall14 papers
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César H. Bernabé 257 citations overall11 papers
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Martin Larralde 0 citations overall11 papers
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Annika Jacobsen 1,388 citations overall9 papers
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Barend Mons 24,435 citations overall7 papers
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Suzan Verberne 2,854 citations overall7 papers
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Marlo Verket 262 citations overall7 papers
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Stefan Decker 17,307 citations overall5 papers
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Rajaram Kaliyaperumal 2,864 citations overall5 papers
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Katharina Marx-Schütt 48 citations overall5 papers
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Sulayman K. Sowe 989 citations overall3 papers
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Yongli Mou 307 citations overall3 papers
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Lifeng Han 285 citations overall3 papers