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Gene Regulatory Network Analysis Sign in to save
Papers per year
Papers 66
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Patient-specific Boolean models of signalling networks guide personalised treatments2022 eLife article Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access
Arnau Montagud, Jonas Béal, Luis Tobalina, Pauline Traynard, Vigneshwari Subramanian, Bence Szalai, +6 more
104citations -
GRAND: a database of gene regulatory network models across human conditions2021 Nucleic Acids Research article Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access cited by 1 patent
Marouen Ben Guebila, Camila M. Lopes‐Ramos, Deborah A. Weighill, Abhijeet R. Sonawane, Rebekka Burkholz, Behrouz Shamsaei, +4 more
102citations -
Patient‐specific logic models of signaling pathways from screenings on cancer biopsies to prioritize personalized combination therapies2020 Molecular Systems Biology article Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access
Federica Eduati, Patricia Jaaks, Jessica Wappler, Thorsten Cramer, Christoph A. Merten, Mathew J. Garnett, +1 more
79citations -
The Network Zoo: a multilingual package for the inference and analysis of gene regulatory networks2023 Genome biology article Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access
Marouen Ben Guebila, Tian Wang, Camila M. Lopes‐Ramos, Viola Fanfani, Des Weighill, Rebekka Burkholz, +19 more
56citations -
A Quantitative Systems Pharmacology Perspective on the Importance of Parameter Identifiability2022 Bulletin of Mathematical Biology article Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access
Anna Sher, Steven Niederer, Gary R. Mirams, Anna Kirpichnikova, Richard Allen, Pras Pathmanathan, +3 more
48citations -
Deciphering the signaling network of breast cancer improves drug sensitivity prediction2021 Cell Systems article Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access
Marco Tognetti, Attila Gábor, Mi Yang, Valentina Cappelletti, Jonas Windhager, Oscar M. Rueda, +9 more
45citations -
scMEGA: single-cell multi-omic enhancer-based gene regulatory network inference2023 Bioinformatics Advances article Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access cited by 1 patent
Zhijian Li, James Shiniti Nagai, Christoph Kuppe, Rafael Kramann, Ivan G. Costa
41citations -
Converting networks to predictive logic models from perturbation signalling data with CellNOpt2020 Bioinformatics article Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access
Enio Gjerga, Panuwat Trairatphisan, Attila Gábor, Hermann Koch, Franceco Ceccarelli, Aurélien J. F. Dugourd, +2 more
37citations -
Phenotypic variability, not noise, accounts for most of the cell-to-cell heterogeneity in IFN-γ and oncostatin M signaling responses2022 Science Signaling article Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access
Karolina Ewa Zakrzewska, Jarosław Walczak, Karol Nienałtowski, Gerhard Müller‐Newen, Abhyudai Singh, Michał Komorowski
35citations -
Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcriptomics data2024 Nature Computational Science article Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access
Daniel Osorio, Anna Capasso, S. Gail Eckhardt, Uma P. Giri, Alexander J. Somma, Todd M. Pitts, +8 more
19citations -
QSP Designer: Quantitative systems pharmacology modeling with modular biological process map notation and multiple language code generation2023 CPT Pharmacometrics & Systems Pharmacology article Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access
David M. Hollinshead, Piet H. van der Graaf, Andrzej M. Kierzek
14citations -
An online notebook resource for reproducible inference, analysis and publication of gene regulatory networks2022 Nature Methods article Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access
Marouen Ben Guebila, Deborah A. Weighill, Camila M. Lopes‐Ramos, Rebekka Burkholz, Romana T Pop, Kalyan Palepu, +8 more
13citations -
Gene syntax defines supercoiling-mediated transcriptional feedback2026 Science article Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access cited by 1 patent
Kasey S. Love, Sneha R Kabaria, Ross D. Jones, Albert Blanch-Asensio, Deon S. Ploessl, Emma L. Peterman, +8 more
13citations -
Biochemical reaction network topology defines dose-dependent Drug–Drug interactions2023 Computers in Biology and Medicine article Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access
Mehrad Babaei, Tom M. J. Evers, Fereshteh Shokri, Lucia Altucci, Elizabeth C. M. de Lange, Alireza Mashaghi
12citations -
A genetic circuit on a single DNA molecule as an autonomous dissipative nanodevice2024 Nature Communications article Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access
Ferdinand Greiss, Nicolas Lardon, Leonie Schütz, Yoav Barak, Shirley Shulman Daube, Elmar G. Weinhold, +2 more
10citations
Most active Aachen authors
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Marieke L. Kuijjer 5,654 citations overall10 papers
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Julio Sáez-Rodríguez 48,113 citations overall7 papers
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Martin Hoefer 3,313 citations overall5 papers
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Zhijian Li 14,278 citations overall4 papers
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Alireza Mashaghi 5,535 citations overall4 papers
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Sebastian Walcher 2,013 citations overall4 papers
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Bence Szalai 2,806 citations overall3 papers
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Luis Tobalina 847 citations overall3 papers
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Vigneshwari Subramanian 687 citations overall3 papers
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Charles Tapley Hoyt 2 citations overall3 papers
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Rafael Kramann 16,535 citations overall2 papers
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Ivan G. Costa 12,219 citations overall2 papers
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Alexander Mitsos 10,876 citations overall2 papers
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Christoph Kuppe 6,383 citations overall2 papers
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Elmar G. Weinhold 6,262 citations overall2 papers