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Papers per year
Papers 102
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Causal integration of multi-omics data with prior knowledge to generate mechanistic hypotheses2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Aurélien J. F. Dugourd, Christoph Kuppe, Marco Sciacovelli, Enio Gjerga, Kristina Bennet Emdal, Dorte B. Bekker‐Jensen, +7 more
16citations -
Recommendations for the analysis of gene expression data to identify intrinsic differences between similar tissues2020 Genomics article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Tooba Abbassi‐Daloii, Hermien E. Kan, Vered Raz, Peter A.C. ’t Hoen
16citations -
Integration of a multi-omics stem cell differentiation dataset using a dynamical model2023 PLoS Genetics article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Patrick R. van den Berg, Noémie M. L. P. Bérenger-Currias, Bogdan Budnik, Nikolai Slavov, Stefan Semrau
15citations -
An in-depth comparison of linear and non-linear joint embedding methods for bulk and single-cell multi-omics2023 Briefings in Bioinformatics article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Stavros Makrodimitris, Bram Pronk, Tamim Abdelaal, Marcel J. T. Reinders
12citations -
Systems Biology in ELIXIR: modelling in the spotlight2022 F1000Research article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Vítor A. P. Martins dos Santos, Mihail Anton, Barbara Szomolay, Marek Ostaszewski, Ilja C.W. Arts, Rui Benfeitas, +31 more
10citations -
iSODA: A Comprehensive Tool for Integrative Omics Data Analysis in Single- and Multi-Omics Experiments2025 Analytical Chemistry article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Damien Olivier‐Jimenez, Rico J. E. Derks, Oscar Harari, Carlos C Cruchaga, Muhammad Asri Mohd Ali, Alessandro Ori, +5 more
10citations -
tRigon: an R package and Shiny App for integrative (path-)omics data analysis2024 BMC Bioinformatics article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
David Laurin Hölscher, Michaël Goedertier, Barbara M. Klinkhammer, Patrick Droste, Ivan G. Costa, Peter Boor, +1 more
7citations -
Reusability and composability in process description maps: RAS–RAF–MEK–ERK signalling2021 Briefings in Bioinformatics article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Alexander Mazein, Adrien Rougny, Julio Sáez-Rodríguez, Marek Ostaszewski, Reinhard Schneider
7citations -
Plant PhysioSpace: a robust tool to compare stress response across plant species2021 PLANT PHYSIOLOGY article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Ali Hadizadeh Esfahani, Janina Maß, Asis Hallab, David Nevarez, Björn Usadel, Mark‐Christoph Ott, +2 more
7citations -
The Molecular Human – A Roadmap of Molecular Interactions Linking Multiomics Networks with Disease Endpoints2022 medRxiv preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Anna Halama, Shaza B. Zaghlool, Gaurav Thareja, Sara Abdul Kader, Wadha Al Muftha, Marjonneke J. Mook-Kanamori, +17 more
5citations -
Utilizing rat kidney gene co-expression networks to enhance safety assessment biomarker identification and human translation2025 iScience article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Steven J. Kunnen, Giulia Callegaro, Jeffrey J. Sutherland, Panuwat Trairatphisan, Hugo W van Kessel, Lukas S. Wijaya, +11 more
4citations -
A thorough analysis of the contribution of experimental, derived and sequence-based predicted protein-protein interactions for functional annotation of proteins2020 PLoS ONE article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Stavros Makrodimitris, Marcel J. T. Reinders, Roeland C. H. J. van Ham
4citations -
Edge and modular significance assessment in individual-specific networks2023 Scientific Reports article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access cited by 1 patent
Federico Melograna, Zuqi Li, Gianluca Galazzo, Niels van Best, Monique Mommers, John Penders, +2 more
3citations -
Reusability and composability in process description maps: RAS-RAF-MEK-ERK signalling2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Alexander Mazein, Adrien Rougny, Jonathan R. Karr, Julio Sáez-Rodríguez, Marek Ostaszewski, Reinhard Schneider
3citations -
Cell type heterogeneity in gene co-expression networks: implications for toxicological research2025 Briefings in Bioinformatics article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Imke B. Bruns, Yingxue Li, James L. Stevens, Bob van de Water, Giulia Callegaro
3citations -
The Immunometabolic Atlas: A tool for design and interpretation of metabolomics studies in immunology2022 PLoS ONE article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Pascal Maas, Ilona den Hartog, Alida S. D. Kindt, Sonja Boman, Thomas Hankemeier, J. G. Coen van Hasselt
3citations
Most active Aachen authors
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Julio Sáez-Rodríguez 48,113 citations overall13 papers
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