Aachen papers per year
Papers 14
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DeepVF: a deep learning-based hybrid framework for identifying virulence factors using the stacking strategy2020 Briefings in Bioinformatics article Biochemistry, Genetics and Molecular Biology Machine Learning in Bioinformatics Open access
Ruopeng Xie, Jiahui Li, Jiawei Wang, Wei Dai, André Leier, Tatiana T. Marquez‐Lago, +4 more
90citations -
Advances and challenges in cell–cell communication inference: a comprehensive review of tools, resources, and future directions2025 Briefings in Bioinformatics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Giulia Cesaro, James Shiniti Nagai, Nicolò Gnoato, Alice Chiodi, Gaia Tussardi, Vanessa Klöker, +6 more
39citations -
A comparison of metabolic labeling and statistical methods to infer genome-wide dynamics of RNA turnover2021 Briefings in Bioinformatics article Biochemistry, Genetics and Molecular Biology RNA Research and Splicing Open access
Etienne Boileau, Janine Altmüller, Isabel S. Naarmann‐de Vries, Christoph Dieterich
21citations -
Comparison and benchmark of structural variants detected from long read and long-read assembly2023 Briefings in Bioinformatics article Biochemistry, Genetics and Molecular Biology Genomic variations and chromosomal abnormalities Open access
Jiadong Lin, Peng Jia, Songbo Wang, Walter A. Kosters, Kai Ye
15citations -
An in-depth comparison of linear and non-linear joint embedding methods for bulk and single-cell multi-omics2023 Briefings in Bioinformatics article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Stavros Makrodimitris, Bram Pronk, Tamim Abdelaal, Marcel J. T. Reinders
12citations -
Reusability and composability in process description maps: RAS–RAF–MEK–ERK signalling2021 Briefings in Bioinformatics article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Alexander Mazein, Adrien Rougny, Julio Sáez-Rodríguez, Marek Ostaszewski, Reinhard Schneider
7citations -
Cell type heterogeneity in gene co-expression networks: implications for toxicological research2025 Briefings in Bioinformatics article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Imke B. Bruns, Yingxue Li, James L. Stevens, Bob van de Water, Giulia Callegaro
3citations -
SIngle cell level Genotyping Using scRna Data (SIGURD)2024 Briefings in Bioinformatics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Martin Graßhoff, Milena Kalmer, Nicolas Chatain, Kim Kricheldorf, Angela Maurer, Ralf Weiskirchen, +2 more
2citations -
NetTDP: permutation-based true discovery proportions for differential co-expression network analysis2022 Briefings in Bioinformatics article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Menglan Cai, Anna Vesely, Xu Chen, Limin Li, Jelle J. Goeman
1citations -
PILOT-GM-VAE: patient-level analysis of single-cell disease atlas with optimal transport of Gaussian mixture variational autoencoders2025 Briefings in Bioinformatics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Mehdi Joodaki, Mina Shaigan, James Shiniti Nagai, Tiago Maié, Christoph Kuppe, Ivan G. Costa
0citations
14 results
Most active Aachen authors
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Ivan G. Costa 12,219 citations overall3 papers
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Jelle J. Goeman 15,936 citations overall2 papers
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James Shiniti Nagai 2,988 citations overall2 papers
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Kai Ye 99,895 citations overall1 paper
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Julio Sáez-Rodríguez 48,113 citations overall1 paper
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Ralf Weiskirchen 30,612 citations overall1 paper
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Henk‐Jan Guchelaar 27,269 citations overall1 paper
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Marcel J. T. Reinders 23,761 citations overall1 paper
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James L. Stevens 20,965 citations overall1 paper
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Stefan Decker 17,307 citations overall1 paper
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Stefan Böhringer 14,016 citations overall1 paper
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Bob van de Water 13,491 citations overall1 paper
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Steffen Koschmieder 11,677 citations overall1 paper
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Christoph Kuppe 6,383 citations overall1 paper
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Yingxue Li 3,429 citations overall1 paper