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Spatial transcriptomics reveals molecular cues underlying the site specificity of the adult mouse oral mucosa and its stem cell niches2024 Stem Cell Reports article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Anna C. Seubert, Marion Krafft, Moutaz Helal, Pranjali Bhandare, Elmar Wolf, Anna Alemany, +2 more
11citations -
Characterization of the human fetal gonad and reproductive tract by single-cell transcriptomics2024 Developmental Cell article Biochemistry, Genetics and Molecular Biology Genetic and Clinical Aspects of Sex Determination and Chromosomal Abnormalities Open access
Jasin Taelman, Sylwia M. Czukiewska, Ioannis Moustakas, Yolanda W. Chang, Sanne Hillenius, Talia van der Helm, +4 more
31citations -
GeneSurfer Enables Transcriptome-wide Exploration and Functional Annotation of Gene Co-expression Modules in 3D Spatial Transcriptomics Data2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Chang Li, Julian Thijssen, Thomas Kroes, Ximaine R. van der Burg, Louise van der Weerd, Thomas Höllt, +1 more
0citations -
mcBERT: Patient-Level Single-cell Transcriptomics Data Representation2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Benedikt von Querfurth, Johannes Lohmöller, Jan Pennekamp, Tore Bleckwehl, Rafael Kramann, Klaus Wehrle, +1 more
3citations -
spacedeconv: deconvolution of tissue architecture from spatial transcriptomics2024 Research Square preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Constantin Zackl, Maria Zopoglou, Reto Stauffer, Markus Außerhofer, Marieke E. Ijsselsteijn, Gregor Sturm, +2 more
4citations -
Human atherosclerotic plaque transcriptomics reveals endothelial beta-2 spectrin as a potential regulator a leaky plaque microvasculature phenotype2024 Angiogenesis article Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases Open access
Timo Rademakers, Marco Manca, Han Young Jin, Tanguy Orban, Ljubica Perisic Matic, Hubertus J. M. Frissen, +16 more
11citations -
Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcriptomics data2024 Nature Computational Science article Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access
Daniel Osorio, Anna Capasso, S. Gail Eckhardt, Uma P. Giri, Alexander J. Somma, Todd M. Pitts, +8 more
19citations -
Mapping Interindividual Variability of Toxicodynamics Using High-Throughput Transcriptomics and Primary Human Hepatocytes from Fifty Donors2024 Environmental Health Perspectives article Pharmacology, Toxicology and Pharmaceutics Drug-Induced Hepatotoxicity and Protection Open access
Marije Niemeijer, Witold Więcek, Shuai Fu, Suzanna Huppelschoten, Peter Bouwman, Audrey Baze, +5 more
16citations -
306P Evaluating genetic therapies targeting the central nervous system in Duchenne muscular dystrophy using high-resolution spatial transcriptomics2024 Neuromuscular Disorders article Biochemistry, Genetics and Molecular Biology Muscle Physiology and Disorders
Ali Reza Ahmadi, L. van Doorne, L. Heezen, Ophélie Vacca, Annemieke M Aartsma-Rus, M. van Putten, +3 more
1citations -
P06-23 Integration of metabolomics and transcriptomics for improved mechanism-based hazard characterization of drug-induced liver injury2024 Toxicology Letters article Pharmacology, Toxicology and Pharmaceutics Drug-Induced Hepatotoxicity and Protection
Franziska Maria Zickgraf, Lukas S. Wijaya, T. de Boer, Sofia Moco, V. Pozo Garcia, Philipp Ternes, +4 more
0citations -
An integrated single‐cell RNA ‐seq atlas of the mouse hypothalamic paraventricular nucleus links transcriptomic and functional types2024 Journal of Neuroendocrinology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Jari B. Berkhout, Delaram Poormoghadam, Chun‐Xia Yi, Andries Kalsbeek, Onno Cornelis Meijer, Ahmed Essam Mahfouz
38citations -
1381 Deciphering the role of immune cell communities in the initiation and progression of human colorectal cancer2024 Regular and Young Investigator Award Abstracts conference-abstract Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
S. Engels, Ana Marta Sequeira, Marieke E. Ijsselsteijn, Benedetta Manzato, Hao Dang, Jurjen J. Boonstra, +5 more
0citations -
Spatial multi-omics in whole skeletal muscle reveals complex tissue architecture2024 Communications Biology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Clara Martínez Mir, Paola Pisterzi, Isabel de Poorter, Maria Rilou, Melissa van Kranenburg, Bram Heijs, +3 more
18citations -
SIRV: spatial inference of RNA velocity at the single-cell resolution2024 NAR Genomics and Bioinformatics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Tamim Abdelaal, Laurens Grossouw, R. Jeroen Pasterkamp, Boudewijn P. F. Lelieveldt, Marcel J. T. Reinders, Ahmed Essam Mahfouz
33citations