Aachen papers per year
Papers 17
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Single-cell reference mapping to construct and extend cell-type hierarchies2023 NAR Genomics and Bioinformatics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Lieke Michielsen, Mohammad Lotfollahi, Daniel C. Strobl, Lisa Sikkema, Marcel J. T. Reinders, Fabian Joachim Theis, +1 more
43citations -
SIRV: spatial inference of RNA velocity at the single-cell resolution2024 NAR Genomics and Bioinformatics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Tamim Abdelaal, Laurens Grossouw, R. Jeroen Pasterkamp, Boudewijn P. F. Lelieveldt, Marcel J. T. Reinders, Ahmed Essam Mahfouz
33citations -
Differential analysis of binarized single-cell RNA sequencing data captures biological variation2021 NAR Genomics and Bioinformatics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Gerard A. Bouland, Ahmed Essam Mahfouz, Marcel J. T. Reinders
29citations -
Benchmarking computational methods for B-cell receptor reconstruction from single-cell RNA-seq data2022 NAR Genomics and Bioinformatics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Tommaso Andreani, Linda M. Slot, Samuel Gabillard, Carsten Strübing, Yaligara Veeranagouda, Aleida M. Bakker, +5 more
14citations -
Conserved structured domains in plant non-coding RNA enod40, their evolution and recruitment of sequences from transposable elements2023 NAR Genomics and Bioinformatics article Agricultural and Biological Sciences Plant Molecular Biology Research Open access
Alexander P. Gultyaev, Céline Koster, Diederik Cames van Batenburg, Tom Sistermans, Niels van Belle, Daan Vijfvinkel, +1 more
12citations -
Untangling biological factors influencing trajectory inference from single cell data2020 NAR Genomics and Bioinformatics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Mohammed Charrout, Marcel J. T. Reinders, Ahmed Essam Mahfouz
12citations -
De-novoreconstruction and identification of transcriptional gene regulatory network modules differentiating single-cell clusters2023 NAR Genomics and Bioinformatics article Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access
Mhaned Oubounyt, Maria L. Elkjaer, Tanja Laske, Alexander G. B. Grønning, Marcus Johannes Moeller, Jan Baumbach
8citations -
gpuZoo: Cost-effective estimation of gene regulatory networks using the Graphics Processing Unit2022 NAR Genomics and Bioinformatics article Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access cited by 1 patent
Marouen Ben Guebila, Daniel C. Morgan, Kimberly Glass, Marieke L. Kuijjer, Dawn Lisa DeMeo, John Quackenbush
8citations -
An ELIXIR scoping review on domain-specific evaluation metrics for synthetic data in life sciences2026 NAR Genomics and Bioinformatics article Medicine Artificial Intelligence in Healthcare and Education Open access
Styliani-Christina Fragkouli, Shaz Iqbal, Lisa C. Crossman, Barbara Gravel, Nagat Masued, Mark Onders, +8 more
3citations -
CONQUER: an interactive toolbox to understand functional consequences of GWAS hits2020 NAR Genomics and Bioinformatics article Biochemistry, Genetics and Molecular Biology Genetic Associations and Epidemiology Open access
Gerard A. Bouland, Joline W. J. Beulens, Joey Nap, Arno R. van der Slik, Arnaud Zaldumbide, Leen M. ‘t Hart, +1 more
3citations -
MUSICiAn: genome-wide identification of genes involved in DNA repair via control-free mutational spectra analysis2026 NAR Genomics and Bioinformatics article Biochemistry, Genetics and Molecular Biology DNA Repair Mechanisms Open access
Colm Seale, Marco Barazas, Robin van Schendel, Marcel Tijsterman, Joana P. Gonçalves
3citations -
Utilizing protein structure graph embeddings to predict the pathogenicity of missense variants2025 NAR Genomics and Bioinformatics article Biochemistry, Genetics and Molecular Biology Genomics and Rare Diseases Open access
Martin Danner, Matthias Begemann, Miriam Elbracht, Ingo Kurth, Jeremias Krause
2citations
17 results
Most active Aachen authors
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Marcel J. T. Reinders 23,761 citations overall5 papers
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Ahmed Essam Mahfouz 8,589 citations overall4 papers
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Marcel Tijsterman 7,224 citations overall2 papers
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Robin van Schendel 2,163 citations overall2 papers
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Gerard A. Bouland 362 citations overall2 papers
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René E. M. Toes 50,376 citations overall1 paper
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Georg Zeller 26,904 citations overall1 paper
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Boudewijn P. F. Lelieveldt 16,420 citations overall1 paper
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Ingo Kurth 13,878 citations overall1 paper
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Leen M. ‘t Hart 10,909 citations overall1 paper
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Hans Ulrich Scherer 9,453 citations overall1 paper
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Roderick C. Slieker 9,252 citations overall1 paper
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Marcus Johannes Moeller 8,513 citations overall1 paper
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Jeroen F. J. Laros 7,512 citations overall1 paper
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Núria Queralt-Rosiñach 5,889 citations overall1 paper