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Complementary chemical probes and substrates reveal split subsite specificity in a fungal GH12 glucanase2026 ChemRxiv preprint Agricultural and Biological Sciences Polysaccharides and Plant Cell Walls Open access
Thamy L R Corrêa, Nicholas G. S. McGregor, Casper de Boer, Sybrin P. Schröder, Quentin P. O. Foucart, Lianne I. Willems, +4 more
0citations -
Structural Basis of Substrate Selectivity and Catalysis in the Mycobacterial Long-Chain Acyl-CoA Carboxylase2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Lipid metabolism and biosynthesis Open access
Ajit Yadav, Nicole Rizzetto, Bogdan I. Florea, Sebastian Geibel
1citations -
Non-prime- and Prime-side Profiling of Pro-Pro Endopeptidase Specificity Using Synthetic Combinatorial Peptide Libraries and Mass Spectrometry2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Enzyme Production and Characterization Open access
Bart Claushuis, Robert A. Cordfunke, Arnoud H. de Ru, Jordy van Angeren, Ulrich Baumann, Peter A. van Veelen, +4 more
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Proteome-wide ubiquitinome profiling reveals substrate-specific dynamics within the USP7 network2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Ubiquitin and proteasome pathways Open access
Joyce Wolf van der Meer, Jan A. VAN DER KNAAP, Ayestha Sijm, Karel Bezstarosti, Dick H. W. Dekkers, Wouter A. S. Doff, +2 more
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Novel class of OTU deubiquitinases regulate substrate ubiquitination upon Legionella infection2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Ubiquitin and proteasome pathways Open access
Anshu Bhattacharya, Yi-Lin Cheng, Marta Campos Alonso, Ahmad Reza Mehdipour, Gerbrand J. van der Heden van Noort, Huib Ovaa, +2 more
3citations -
Integrin α5β1 nano-presentation regulates collective keratinocyte migration independent of substrate rigidity2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Cellular Mechanics and Interactions Open access
Jacopo Di Russo, Jennifer L. Young, Julian WR Wegner, Timmy Steins, Horst Kessler, Joachim Pius Spatz
0citations -
In-depth specificity profiling of Pro-Pro endopeptidases (PPEPs) using combinatorial synthetic peptide libraries2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Protease and Inhibitor Mechanisms Open access
Bart Claushuis, Robert A. Cordfunke, Arnoud H. de Ru, Annemarie M. Otte, Hans C. van Leeuwen, Oleg I. Klychnikov, +4 more
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Genomic and metabolic plasticity drive alternative scenarios for adapting Pseudomonas putida to non-native substrate D-xylose2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Pavel Dvořák, Barbora Burýšková, Barbora Popelářová, Birgitta E. Ebert, Tibor Botka, Dalimil Bujdoš, +6 more
0citations -
A β-Hairpin Epitope as Novel Structural Requirement for Protein Arginine Rhamnosylation2020 ChemRxiv preprint Biochemistry, Genetics and Molecular Biology Glycosylation and Glycoproteins Research Open access
Nathaniel I. Martin, Marthe T. C. Walvoort, Liubov Yakovlieva, Thomas Keith Wood, Johan Kemmink, Franziska Koller, +2 more
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SUMO Activated Target Traps (SATTs) enable the identification of a comprehensive E3-specific SUMO proteome2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Ubiquitin and proteasome pathways Open access
Daniel Salas‐Lloret, Coen van der Meulen, Easa Nagamalleswari, Ekaterina Gracheva, Arnoud H. de Ru, H. Anne Marie Otte, +5 more
3citations -
Molecular properties of RmlT, a wall teichoic acid rhamnosyltransferase that modulates virulence in Listeria monocytogenes2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Chemistry Carbohydrate Chemistry and Synthesis Open access
Ricardo Monteiro, Tatiana Cereija, Rita Pombinho, Sandra Sousa, João Henrique Morais-Cabral, Didier Cabanes
0citations -
Functional analysis of the fatty acid and alcohol metabolism of Pseudomonas putida using RB-TnSeq2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Mitchell G. Thompson, Matthew R. Incha, Allison N. Pearson, Matthias Schmidt, William A. Sharpless, Christopher B. Eiben, +12 more
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Host-dependent resistance of Group A Streptococcus to sulfamethoxazole mediated by a horizontally-acquired ECF transporter S component2022 Research Square preprint Biochemistry, Genetics and Molecular Biology Antibiotic Resistance in Bacteria Open access
M. Kalindu D. Rodrigo, Aarti Saiganesh, Andrew James Hayes, Jack Anstey, Jua Iwasaki, Janessa L. Pickering, +12 more
1citations -
CellEKT: A robust chemical proteomics workflow to profile cellular target engagement of kinase inhibitors2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Chemistry Advanced Proteomics Techniques and Applications Open access
Joel Rüegger, Berend Gagestein, Antonius P. A. Janssen, Alexandra Valeanu, Alger Lazo Mori, Marielle van der Peet, +16 more
1citations -
KnowVolution of an efficient polyamidase through molecular dynamics simulations of incrementally docked oligomeric substrates2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Enzyme Catalysis and Immobilization Open access
Hendrik Puetz, Alexander-Maurice Illig, Mariia Vorobii, Christoph Janknecht, Francisca Contreras, Fabian Flemig, +1 more
1citations -
Dual control of MAPK activities by AP2C1 and MKP1 MAPK phosphatases regulates defence responses in Arabidopsis2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Protein Tyrosine Phosphatases Open access
Zahra Ayatollahi, Vaiva Kazanavičiūtė, Volodymyr Shubchynskyy, Kotryna Kvederavičiūtė, Manfred Schwanninger, Wilfried Rozhon, +8 more
0citations -
SKOR1 mediates FER kinase-dependent invasive growth of breast cancer cells2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Mechanisms of cancer metastasis Open access
Lilian M. Sluimer, Esme Bullock, Max A. K. Rätze, Lotte N.F.L. Enserink, Celine Overbeeke, Marten Hornsveld, +3 more
1citations -
Surface-specific vibrational spectroscopy of interfacial water reveals large pH change near graphene electrode at low current densities2022 arXiv (Cornell University) preprint Physics and Astronomy Spectroscopy and Quantum Chemical Studies Open access
Yongkang Wang, Takakazu Seki, Chun‐Chieh Yu, Katrin F. Domke, Johannes Hunger, Marc T. M. Koper, +3 more
2citations -
Menaquinone-specific oxidation by M. tuberculosis cytochrome bd is redox regulated by the Q-loop disulfide bond2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Materials Science Enzyme Structure and Function Open access
Tijn T. van der Velden, Caspar Y. J. Waterham, Lars J. C. Jeuken
1citations