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Utilizing protein structure graph embeddings to predict the pathogenicity of missense variants2025 NAR Genomics and Bioinformatics article Biochemistry, Genetics and Molecular Biology Genomics and Rare Diseases Open access
Martin Danner, Matthias Begemann, Miriam Elbracht, Ingo Kurth, Jeremias Krause
2citations -
Utilizing protein structure graph embeddings to predict the pathogenicity of missense variants2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Rare Diseases Open access
Martin Danner, Matthias Begemann, Miriam Elbracht, Ingo Kurth, Jeremias Krause
0citations -
Unsupervised protein embeddings outperform hand-crafted sequence and structure features at predicting molecular function2020 Bioinformatics article Biochemistry, Genetics and Molecular Biology Machine Learning in Bioinformatics Open access cited by 2 patents
Amelia Villegas-Morcillo, Stavros Makrodimitris, Roeland C. H. J. van Ham, Angel Manuel Gomez, Marcel J. T. Reinders
137citations -
Isotope Decluttering Reduces Spectral Complexity while Maintaining Protein Structure2026 Analytical Chemistry article Chemistry Mass Spectrometry Techniques and Applications Open access
Sneha Hakke, Willem E. M. Noteborn, Birol Cabukusta, Ye Gao, Kèvin Knoops, Carmen López‐Iglesias, +4 more
0citations -
Understanding and Controlling Food Protein Structure and Function in Foods: Perspectives from Experiments and Computer Simulations2020 Annual Review of Food Science and Technology review Agricultural and Biological Sciences Proteins in Food Systems Open access
Fernando Luís Barroso da Silva, Paolo Carloni, David L. Cheung, Grazia Cottone, Serena Donnini, Edward Allen Foegeding, +7 more
55citations -
The Crystal Structure of the Defense Conferring Rice Protein OsJAC1 Reveals a Carbohydrate Binding Site on the Dirigent-like Domain2022 Biomolecules article Agricultural and Biological Sciences Plant-Microbe Interactions and Immunity Open access
Nikolai Huwa, Oliver H. Weiergräber, Alexander Veljko Fejzagić, Christian Kirsch, Ulrich Schaffrath, Thomas Claßen
12citations -
Critical assessment of structure-based approaches to improve protein resistance in aqueous ionic liquids by enzyme-wide saturation mutagenesis2021 Computational and Structural Biotechnology Journal article Biochemistry, Genetics and Molecular Biology Enzyme Catalysis and Immobilization Open access
Till El Harrar, Mehdi D. Davari, Karl‐Erich Jaeger, Ulrich Schwaneberg, Holger Gohlke
14citations -
Bone morphogenetic protein receptors: Structure, function and targeting by selective small molecule kinase inhibitors2020 Bone article Biochemistry, Genetics and Molecular Biology TGF-β signaling in diseases Open access cited by 13 patents
Gonzalo Sánchez‐Duffhues, Eleanor Williams, Marie‐José Goumans, Carl‐Henrik Heldin, Peter ten Dijke
118citations -
In Cellulo Cysteine Umpolung for Protein Structure Probing2025 Journal of the American Chemical Society article Chemistry Click Chemistry and Applications Open access
Philipp Hartmann, Kostiantyn Bohdan, Lara Vogelsang, Dario Marchionni, Christian Preisinger, Alessandro Vetere, +2 more
11citations -
ProMET project: Fundamental protein metrology towards a better definition of the measurand2025 conference-paper Decision Sciences Scientific Measurement and Uncertainty Evaluation Open access
Amandine Bœuf, Cristian Gabriel Arsene, Laura Cavallarin, Sarah Cianférani, Christa M. Cobbaert, Declan Cook, +26 more
0citations -
Ten numbers from the Laplace–Beltrami spectrum facilitate training-free classification of protein structures based on surface shape2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics Open access
Miriam Fernández-Giro Muñoz, Jessica Emonts, Benjamin Berkels, Johannes F. Buyel
0citations -
Fold first, ask later: structure-informed function annotation of Pseudomonas phage proteins2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Environmental Science Bacteriophages and microbial interactions Open access
Hannelore Longin, George Spyro Bouras, Susanna R. Grigson, Robert Alan Edwards, Hanne Hendrix, Rob Lavigne, +1 more
0citations -
Application of a novel RNA-protein interaction assay to develop inhibitors blocking RNA-binding of the HuR protein2025 Frontiers in Genetics article Biochemistry, Genetics and Molecular Biology RNA Research and Splicing Open access
Larissa Filcenkova, Annika Reisbitzer, Benjamin Philipp Joseph, Verena Weber, Paolo Carloni, Giulia Rossetti, +1 more
0citations -
Fi-score: a novel approach to characterise protein topology and aid in drug discovery studies2020 Journal of Biomolecular Structure and Dynamics article Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics
Austė Kanapeckaitė, Claudia Beaurivage, MATTHEW J. HANCOCK, Erik Verschueren
3citations -
ProteinCT: An implementation of the protein circuit topology framework2022 MethodsX article Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics Open access
Duane Moes, Seyedeh Elnaz Banijamali, Vahid Sheikhhassani, Barbara Scalvini, Jaie C. Woodard, Alireza Mashaghi
7citations -
Structure, Functions, and Implications of Selected Lipocalins in Human Disease2024 International Journal of Molecular Sciences article Biochemistry, Genetics and Molecular Biology Protein Interaction Studies and Fluorescence Analysis Open access
Preethi Chandrasekaran, Sabine Weiskirchen, Ralf Weiskirchen
39citations -
Deciphering conformational selectivity in the A 2A adenosine G protein-coupled receptor by Free Energy simulations2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Receptor Mechanisms and Signaling Open access
Willem Jespers, Laura H. Heitman, Adriaan P. IJzerman, Eddy Sotelo, Gerard J. P. van Westen, Johan Åqvist, +1 more
1citations