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A Modular Workflow for Performance Benchmarking of Neuronal Network Simulations2022 Frontiers in Neuroinformatics article Computer Science Parallel Computing and Optimization Techniques Open access
Jasper Albers, Jari Pronold, Anno Christopher Kurth, Stine Brekke Vennemo, Kaveh Haghighi Mood, Alexander Patronis, +6 more
15citations -
Edge and modular significance assessment in individual-specific networks2023 Scientific Reports article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access cited by 1 patent
Federico Melograna, Zuqi Li, Gianluca Galazzo, Niels van Best, Monique Mommers, John Penders, +2 more
3citations -
Hierarchical network structure as the source of hierarchical dynamics (power-law frequency spectra) in living and non-living systems: How state-trait continua (body plans, personalities) emerge from first principles in biophysics9citations
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QSP Designer: Quantitative systems pharmacology modeling with modular biological process map notation and multiple language code generation2023 CPT Pharmacometrics & Systems Pharmacology article Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access
David M. Hollinshead, Piet H. van der Graaf, Andrzej M. Kierzek
14citations -
Supramolecular Engineering of Fluid Pressure in Filamentous Hybrid Double Network Hydrogels for 3D Chondrocyte Culture2026 Advanced Healthcare Materials article Biochemistry, Genetics and Molecular Biology Hydrogels: synthesis, properties, applications Open access
Ciqing Tong, Ying Chen, Merel L. Janssen, Isabel Sariol, Joeri A. J. Wondergem, Marijn van den Brink, +6 more
0citations -
Dynamic functional connectivity brain state dynamics and topological organization in major depressive disorder, anxiety disorder and childhood trauma2025 Journal of Affective Disorders article Neuroscience Functional Brain Connectivity Studies Open access
Felix Linsen, Josine E. Verhoeven, Marie‐José van Tol, Nic J.A. van der Wee, Brenda W.J.H. Penninx, Menno Michiel Schoonheim, +1 more
1citations -
Developmental Changes in Dynamic Functional Connectivity From Childhood Into Adolescence2021 Frontiers in Systems Neuroscience article Neuroscience Functional Brain Connectivity Studies Open access
Mònica López-Vicente, Oktay Agcaoglu, Laura Pérez‐Crespo, Fernando Estévez‐López, José María Heredia‐Genestar, Rosa H. Mulder, +7 more
41citations -
Spatial turnover of fungi and partner choice shape mycorrhizal networks in epiphytic orchids2022 Journal of Ecology article Agricultural and Biological Sciences Mycorrhizal Fungi and Plant Interactions Open access
Rémi Petrolli, Lucie Zinger, Benoît Perez‐Lamarque, Géromine Collobert, Chantal Griveau, Thierry Pailler, +2 more
16citations -
Reusability and composability in process description maps: RAS–RAF–MEK–ERK signalling2021 Briefings in Bioinformatics article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Alexander Mazein, Adrien Rougny, Julio Sáez-Rodríguez, Marek Ostaszewski, Reinhard Schneider
7citations -
Effects of Bumetanide on Neurocognitive Functioning in Children with Autism Spectrum Disorder: Secondary Analysis of a Randomized Placebo-Controlled Trial2023 Journal of Autism and Developmental Disorders article Neuroscience Autism Spectrum Disorder Research Open access
Dorinde M. van Andel, Jan J. Sprengers, Marsh Königs, Maretha V. de Jonge, Hilgo Bruining
18citations -
A new era of synthetic biology—microbial community design2024 Synthetic Biology article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Anna Matuszyńska, Oliver Ebenhöh, Matias Daniel Zurbriggen, Daniel C. Ducat, Ilka Maria IM Axmann
42citations