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High-Dimensional Single-Cell Analysis of Natural Killer Cell Heterogeneity in Human Blood2024 Research Square preprint Immunology and Microbiology Immune Cell Function and Interaction Open access
Eric D. Vivier, Lucas Rebuffet, Janine E. Melsen, Daniela Basurto-Lozada, Avinash Bhandoola, Niklas K. Björkström, +21 more
3citations -
High-dimensional single-cell analysis of human natural killer cell heterogeneity2024 Nature Immunology article Immunology and Microbiology Immune Cell Function and Interaction Open access
Lucas Rebuffet, Janine E. Melsen, Bertrand Escalière, Daniela Basurto-Lozada, Avinash Bhandoola, Niklas K. Björkström, +21 more
278citations -
Single-cell analysis of regions of interest (SCARI) using a photosensitive tag2021 Nature Chemical Biology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access cited by 1 patent
Anne M. van der Leun, Mirjam E. Hoekstra, Luuk Reinalda, Colinda L. G. J. Scheele, Mireille Toebes, Michel J. van de Graaff, +11 more
18citations -
EAP4EMSIG -- Enhancing Event-Driven Microscopy for Microfluidic Single-Cell Analysis2025 arXiv (Cornell University) preprint Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access
Nils Friederich, Angelo Jovin Yamachui Sitcheu, Annika Nassal, Erenus Yildiz, Matthias Pesch, Maximilian Beichter, +9 more
0citations -
Single-cell analysis of human fetal epicardium reveals its cellular composition and identifies CRIP1 as a modulator of EMT2023 Stem Cell Reports article Biochemistry, Genetics and Molecular Biology Congenital heart defects research Open access
Thomas J. Streef, Esmee J. Groeneveld, Tessa van Herwaarden, Jesper Hjortnaes, Marie‐José Goumans, Anke M. Smits
16citations -
Best practices for single-cell analysis across modalities2023 Nature Reviews Genetics review Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access cited by 7 patents
Lukas Heumos, Anna Christina Schaar, Christopher Lance, Anastasia Litinetskaya, Felix Drost, Luke Zappia, +36 more
1,043citations -
Differential analysis of binarized single-cell RNA sequencing data captures biological variation2021 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Gerard A. Bouland, Ahmed Essam Mahfouz, Marcel J. T. Reinders
0citations -
Differential analysis of binarized single-cell RNA sequencing data captures biological variation2021 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Gerard A. Bouland, Ahmed Essam Mahfouz, Marcel J. T. Reinders
0citations -
Cytosplore-Transcriptomics: a scalable inter-active framework for single-cell RNA sequenc-ing data analysis2020 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Tamim Abdelaal, Jeroen Eggermont, Thomas Höllt, Ahmed Essam Mahfouz, Marcel J. T. Reinders, Boudewijn P. F. Lelieveldt
0citations -
Cytosplore-Transcriptomics: a scalable inter-active framework for single-cell RNA sequenc-ing data analysis2020 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Tamim Abdelaal, Jeroen Eggermont, Thomas Höllt, Ahmed Essam Mahfouz, Marcel J. T. Reinders, Boudewijn P. F. Lelieveldt
0citations -
Single‐cell omics: Overview, analysis, and application in biomedical science2021 Journal of Cellular Biochemistry article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Catarina M. Stein, Ralf Weiskirchen, Frédérik Damm, Paulina M. Strzelecka
43citations -
Author response: A physicochemical perspective of aging from single-cell analysis of pH, macromolecular and organellar crowding in yeast2020 peer-review Biochemistry, Genetics and Molecular Biology Genetics, Aging, and Longevity in Model Organisms Open access
Sara N. Mouton, David J. Thaller, Matthew M. Crane, Irina L. Rempel, Owen T Terpstra, Anton Steen, +4 more
2citations -
scMEGA: single-cell multi-omic enhancer-based gene regulatory network inference2023 Bioinformatics Advances article Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access cited by 1 patent
Zhijian Li, James Shiniti Nagai, Christoph Kuppe, Rafael Kramann, Ivan G. Costa
41citations -
Single-cell RNA sequencing analysis of the human fetal epicardium results in novel epicardial-specific markers and reveals a role for CRIP1 in epicardial EMT2023 European Heart Journal article Biochemistry, Genetics and Molecular Biology Congenital heart defects research Open access
Anke M. Smits, T J Streef, Els Groeneveld, Tessa van Herwaarden, Marie‐José Goumans
0citations -
Single-Cell Transcriptomics Analysis of Human Small Antral Follicles2021 International Journal of Molecular Sciences article Medicine Reproductive Biology and Fertility Open access
Xueying Fan, Ioannis Moustakas, Monika Bialecka, Julieta S. del Valle, Arend W. Overeem, Leoni A. Louwé, +4 more
35citations -
PHLOWER - Single cell trajectory analysis using Hodge Decomposition2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Mingbo Cheng, Jitske Jansen, Katharina C. Reimer, James Shiniti Nagai, Zhijian Li, Paul Kießling, +5 more
0citations