Best practices for single-cell analysis across modalities

Nature Reviews Genetics, vol. 24, pp. 550–572

Authors 42

1. Lukas Heumos

   Helmholtz Munich · German Center for Lung Research · Institute of Computational Biology · Technical University of Munich

   Affiliation as printed

   Institute of Computational Biology, Department of Computational Health, Helmholtz Munich, Munich, Germany

   Institute of Lung Health and Immunity and Comprehensive Pneumology Center, Helmholtz Munich; Member of the German Center for Lung Research (DZL), Munich, Germany

   TUM School of Life Sciences Weihenstephan, Technical University of Munich, Munich, Germany

2. Anna Christina Schaar

   Helmholtz Munich · Munich Center for Machine Learning · Institute of Computational Biology · Technical University of Munich

   Affiliation as printed

   Department of Mathematics, School of Computation, Information and Technology, Technical University of Munich, Garching, Germany

   Institute of Computational Biology, Department of Computational Health, Helmholtz Munich, Munich, Germany

   Munich Center for Machine Learning, Technical University of Munich, Garching, Germany

3. Christopher Lance

   Helmholtz Munich · Institute of Computational Biology · Ludwig-Maximilians-Universität München

   Affiliation as printed

   Department of Paediatrics, Dr von Hauner Children's Hospital, University Hospital, Ludwig-Maximilians-Universität München, Munich, Germany

   Institute of Computational Biology, Department of Computational Health, Helmholtz Munich, Munich, Germany

4. Anastasia Litinetskaya

   Helmholtz Munich · Institute of Computational Biology · Technical University of Munich

   Affiliation as printed

   Department of Mathematics, School of Computation, Information and Technology, Technical University of Munich, Garching, Germany

   Institute of Computational Biology, Department of Computational Health, Helmholtz Munich, Munich, Germany

5. Felix Drost

   Helmholtz Munich · Institute of Computational Biology · Technical University of Munich

   Affiliation as printed

   Institute of Computational Biology, Department of Computational Health, Helmholtz Munich, Munich, Germany

   TUM School of Life Sciences Weihenstephan, Technical University of Munich, Munich, Germany

6. Luke Zappia

   Helmholtz Munich · Institute of Computational Biology · Technical University of Munich

   Affiliation as printed

   Department of Mathematics, School of Computation, Information and Technology, Technical University of Munich, Garching, Germany

   Institute of Computational Biology, Department of Computational Health, Helmholtz Munich, Munich, Germany

7. Malte D. Luecken

   Helmholtz Munich · Institute of Computational Biology

   Affiliation as printed

   Institute of Computational Biology, Department of Computational Health, Helmholtz Munich, Munich, Germany

   Institute of Lung Health and Immunity, Helmholtz Munich, Munich, Germany

8. Daniel C. Strobl

   Helmholtz Munich · Institute of Computational Biology · Technical University of Munich

   Affiliation as printed

   Institute of Clinical Chemistry and Pathobiochemistry, School of Medicine, Technical University of Munich, Munich, Germany

   Institute of Computational Biology, Department of Computational Health, Helmholtz Munich, Munich, Germany

   TUM School of Life Sciences Weihenstephan, Technical University of Munich, Munich, Germany

   TranslaTUM, Center for Translational Cancer Research, Technical University of Munich, Munich, Germany

9. Juan Henao

   Helmholtz Munich · Institute of Computational Biology

   Affiliation as printed

   Institute of Computational Biology, Department of Computational Health, Helmholtz Munich, Munich, Germany

10. Fabiola Curion

    Helmholtz Munich · Institute of Computational Biology · Technical University of Munich

    Affiliation as printed

    Department of Mathematics, School of Computation, Information and Technology, Technical University of Munich, Garching, Germany

    Institute of Computational Biology, Department of Computational Health, Helmholtz Munich, Munich, Germany

11. Hananeh Aliee

    Helmholtz Munich · Institute of Computational Biology

    Affiliation as printed

    Institute of Computational Biology, Department of Computational Health, Helmholtz Munich, Munich, Germany

12. Meshal Ansari

    Helmholtz Munich · German Center for Lung Research · Institute of Computational Biology

    Affiliation as printed

    Institute of Computational Biology, Department of Computational Health, Helmholtz Munich, Munich, Germany

    Institute of Lung Health and Immunity and Comprehensive Pneumology Center, Helmholtz Munich; Member of the German Center for Lung Research (DZL), Munich, Germany

13. Pau Badia-i-Mompel

    Heidelberg University · University Hospital Heidelberg

    Affiliation as printed

    Institute for Computational Biomedicine, Heidelberg University and Heidelberg University Hospital, Heidelberg, Germany

14. Maren Büttner

    University of Bonn · German Center for Neurodegenerative Diseases · Helmholtz Munich · Institute of Computational Biology

    Affiliation as printed

    Genomics and Immunoregulation, Life & Medical Sciences (LIMES) Institute, University of Bonn, Bonn, Germany

    Institute of Computational Biology, Department of Computational Health, Helmholtz Munich, Munich, Germany

    Systems Medicine, Deutsches Zentrum für Neurodegenerative Erkrankungen (DZNE), Bonn, Germany

15. Emma Dann

    Wellcome Sanger Institute

    Affiliation as printed

    Wellcome Sanger Institute, Hinxton, Cambridge, UK

16. Daniel Dimitrov

    Heidelberg University · University Hospital Heidelberg

    Affiliation as printed

    Institute for Computational Biomedicine, Heidelberg University and Heidelberg University Hospital, Heidelberg, Germany

17. Leander Dony

    Helmholtz Munich · Max Planck Institute of Psychiatry · Institute of Computational Biology · Technical University of Munich

    Affiliation as printed

    Department of Translational Psychiatry, Max Planck Institute of Psychiatry, and International Max Planck Research School for Translational Psychiatry (IMPRS-TP), Munich, Germany

    Institute of Computational Biology, Department of Computational Health, Helmholtz Munich, Munich, Germany

    TUM School of Life Sciences Weihenstephan, Technical University of Munich, Munich, Germany

18. Amit Frishberg

    Helmholtz Munich · Institute of Computational Biology

    Affiliation as printed

    Institute of Computational Biology, Department of Computational Health, Helmholtz Munich, Munich, Germany

19. Dongze He

    University of Maryland, College Park

    Affiliation as printed

    Center for Bioinformatics and Computational Biology, University of Maryland, College Park, MD, USA

    Department of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD, USA

20. Soroor Hediyeh-zadeh

    Helmholtz Munich · Institute of Computational Biology

    Affiliation as printed

    Institute of Computational Biology, Department of Computational Health, Helmholtz Munich, Munich, Germany

21. Leon Hetzel

    Helmholtz Munich · Munich Center for Machine Learning · Institute of Computational Biology · Technical University of Munich

    Affiliation as printed

    Department of Mathematics, School of Computation, Information and Technology, Technical University of Munich, Garching, Germany

    Institute of Computational Biology, Department of Computational Health, Helmholtz Munich, Munich, Germany

    Munich Center for Machine Learning, Technical University of Munich, Garching, Germany

22. Ignacio L. Ibarra

    Helmholtz Munich · Institute of Computational Biology

    Affiliation as printed

    Institute of Computational Biology, Department of Computational Health, Helmholtz Munich, Munich, Germany

23. Matthew G. Jones

    Stanford Medicine · Stanford University

    Affiliation as printed

    Center for Personal Dynamic Regulomes, Stanford University School of Medicine, Stanford, CA, USA

24. Mohammad Lotfollahi

    Wellcome Sanger Institute · Helmholtz Munich · Institute of Computational Biology

    Affiliation as printed

    Institute of Computational Biology, Department of Computational Health, Helmholtz Munich, Munich, Germany

    Wellcome Sanger Institute, Hinxton, Cambridge, UK

25. Laura D. Martens

    Helmholtz Munich · Institute of Computational Biology · Technical University of Munich

    Affiliation as printed

    Department of Computer Science, School of Computation, Information and Technology, Technical University of Munich, Garching, Germany

    Institute of Computational Biology, Department of Computational Health, Helmholtz Munich, Munich, Germany

26. Christian L. Müller

    Helmholtz Munich · Flatiron Institute · Institute of Computational Biology · Ludwig-Maximilians-Universität München

    Affiliation as printed

    Center for Computational Mathematics, Flatiron Institute, New York, NY, USA

    Department of Statistics, Ludwig-Maximilians-Universität München, Munich, Germany

    Institute of Computational Biology, Department of Computational Health, Helmholtz Munich, Munich, Germany

27. Mor Nitzan

    Hebrew University of Jerusalem

    Affiliation as printed

    Racah Institute of Physics, The Hebrew University of Jerusalem, Jerusalem, Israel

    School of Computer Science and Engineering, The Hebrew University of Jerusalem, Jerusalem, Israel

28. Johannes Ostner

    Helmholtz Munich · Institute of Computational Biology · Ludwig-Maximilians-Universität München

    Affiliation as printed

    Department of Statistics, Ludwig-Maximilians-Universität München, Munich, Germany

    Institute of Computational Biology, Department of Computational Health, Helmholtz Munich, Munich, Germany

29. Giovanni Palla

    Helmholtz Munich · Institute of Computational Biology · Technical University of Munich

    Affiliation as printed

    Institute of Computational Biology, Department of Computational Health, Helmholtz Munich, Munich, Germany

    TUM School of Life Sciences Weihenstephan, Technical University of Munich, Munich, Germany

30. Rob Patro

    University of Maryland, College Park

    Affiliation as printed

    Department of Computer Science, University of Maryland, College Park, MD, USA

31. Zoe Piran

    Hebrew University of Jerusalem

    Affiliation as printed

    School of Computer Science and Engineering, The Hebrew University of Jerusalem, Jerusalem, Israel

32. Ciro Ramírez-Suástegui

    La Jolla Institute for Immunology · Helmholtz Munich · Institute of Computational Biology

    Affiliation as printed

    Institute of Computational Biology, Department of Computational Health, Helmholtz Munich, Munich, Germany

    La Jolla Institute for Immunology, La Jolla, CA, USA

33. Julio Sáez-Rodríguez Aachen Joint Research Centre for Computational Biomedicine (JRC-COMBINE) Faculty of Medicine

    Heidelberg University · University Hospital Heidelberg · RWTH Aachen University

    Affiliation as printed

    Institute for Computational Biomedicine, Heidelberg University and Heidelberg University Hospital, Heidelberg, Germany

    Joint Research Centre for Computational Biomedicine (JRC-COMBINE), Faculty of Medicine, RWTH Aachen University, Aachen, Germany

34. Hirak Sarkar

    Harvard University

    Affiliation as printed

    Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA

35. Benjamin Schubert

    Helmholtz Munich · Institute of Computational Biology · Technical University of Munich

    Affiliation as printed

    Department of Mathematics, School of Computation, Information and Technology, Technical University of Munich, Garching, Germany

    Institute of Computational Biology, Department of Computational Health, Helmholtz Munich, Munich, Germany

36. Lisa Sikkema

    Helmholtz Munich · Institute of Computational Biology · Technical University of Munich

    Affiliation as printed

    Institute of Computational Biology, Department of Computational Health, Helmholtz Munich, Munich, Germany

    TUM School of Life Sciences Weihenstephan, Technical University of Munich, Munich, Germany

37. Avi Srivastava

    New York Genome Center

    Affiliation as printed

    New York Genome Center, New York, NY, USA

38. Jovan Tanevski

    Heidelberg University · University Hospital Heidelberg

    Affiliation as printed

    Institute for Computational Biomedicine, Heidelberg University and Heidelberg University Hospital, Heidelberg, Germany

39. Isaac Virshup

    Helmholtz Munich · Institute of Computational Biology

    Affiliation as printed

    Institute of Computational Biology, Department of Computational Health, Helmholtz Munich, Munich, Germany

40. Philipp Weiler

    Helmholtz Munich · Institute of Computational Biology · Technical University of Munich

    Affiliation as printed

    Department of Mathematics, School of Computation, Information and Technology, Technical University of Munich, Garching, Germany

    Institute of Computational Biology, Department of Computational Health, Helmholtz Munich, Munich, Germany

41. Herbert B. Schiller

    Helmholtz Munich · German Center for Lung Research

    Affiliation as printed

    Institute of Lung Health and Immunity and Comprehensive Pneumology Center, Helmholtz Munich; Member of the German Center for Lung Research (DZL), Munich, Germany

    Institute of Lung Health and Immunity and Comprehensive Pneumology Center, Helmholtz Munich

    Member of the German Center for Lung Research (DZL), Munich, Germany

42. Fabian Joachim Theis corresponding

    Helmholtz Munich · Munich Center for Machine Learning · Institute of Computational Biology · Technical University of Munich

    Affiliation as printed

    Department of Mathematics, School of Computation, Information and Technology, Technical University of Munich, Garching, Germany. fabian.theis@helmholtz-muenchen.de

    Institute of Computational Biology, Department of Computational Health, Helmholtz Munich, Munich, Germany. fabian.theis@helmholtz-muenchen.de

    Munich Center for Machine Learning, Technical University of Munich, Garching, Germany. fabian.theis@helmholtz-muenchen.de

    TUM School of Life Sciences Weihenstephan, Technical University of Munich, Munich, Germany. fabian.theis@helmholtz-muenchen.de

    Department of Mathematics, School of Computation, Information and Technology, Technical University of Munich, Garching, Germany