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Dynamics and role of covalently-closed circular RNAs in Alzheimer's disease: A review of experimental and bioinformatics studies2025 Neurobiology of Aging article Biochemistry, Genetics and Molecular Biology Circular RNAs in diseases Open access
Nikta Zafarjafarzadeh, Elham Feridouni, Javad Amini, Samaneh Mollazadeh, Hamed Tabatabaei Ghomi, Cordian Beyer, +1 more
1citations -
Integrated bioinformatics and experimental validation identify FOXQ1, GRIN2D, and SCNN1B as novel biomarkers for distinguishing high-risk sessile serrated lesions from hyperplastic polyps
Nayeralsadat Fatemi, Zeynab Piryaei, Elahe Daskar Abkenar, Elham Zonoobi, Nada Badr, Ali Aghaei, +8 more
0citations -
iFeatureOmega: an integrative platform for engineering, visualization and analysis of features from molecular sequences, structural and ligand data sets2022 Nucleic Acids Research article Biochemistry, Genetics and Molecular Biology Machine Learning in Bioinformatics Open access
Zhen Chen, Xuhan Liu, Pei Zhao, Chen Li, Yanan Wang, Fuyi Li, +7 more
102citations -
Advances and challenges in cell–cell communication inference: a comprehensive review of tools, resources, and future directions2025 Briefings in Bioinformatics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Giulia Cesaro, James Shiniti Nagai, Gnoato Nicolò, Alice Chiodi, Gaia Tussardi, Vanessa Klöker, +6 more
41citations -
An educational guide for nanopore sequencing in the classroom2020 PLoS Computational Biology article Biochemistry, Genetics and Molecular Biology Genetics, Bioinformatics, and Biomedical Research Open access
Alex Salazar, Franklin L. Nóbrega, Christine Anyansi, Cristian Aparicio-Maldonado, Ana Rita Costa, Anna C. Haagsma, +6 more
32citations -
Metagenomics education in a modular CURE format positively affects students' scientific discovery perception and data analytical skills2025 Biochemistry and Molecular Biology Education article Biochemistry, Genetics and Molecular Biology Genetics, Bioinformatics, and Biomedical Research
Maarten C. Morsink, E. N. van Schaik, Koen Bossers, Deniz Antonie Duijker, Arjen G. C. L. Speksnijder
2citations -
Next generation sequencing approaches for the detection and characterization of enteroviruses in clinical, public health, and research settings: Expert view of the European non-polio enterovirus network (ENPEN)2026 Journal of Clinical Virology article Medicine Viral Infections and Immunology Research Open access
Kimberley Benschop, Florian Zwagemaker, Lili Li, Cristina Andrés, Andrés Antón, Carla Berengua, +71 more
1citations -
Recommendations for the introduction of metagenomic next-generation sequencing in clinical virology, part II: bioinformatic analysis and reporting2021 Journal of Clinical Virology article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Jutte J.C. de Vries, Julianne Rose Brown, Natacha Couto, Martin Beer, Philippe Le Mercier, Igor A. Sidorov, +22 more
88citations -
STROBE-metagenomics: a STROBE extension statement to guide the reporting of metagenomics studies2020 The Lancet Infectious Diseases article Biochemistry, Genetics and Molecular Biology Bacterial Identification and Susceptibility Testing Open access
Tehmina Bharucha, Clarissa Oeser, François Balloux, Julianne Rose Brown, Ellen C. Carbo, André Charlett, +21 more
74citations -
Future Computer Systems and Networking Research in the Netherlands: A Manifesto2022 arXiv (Cornell University) preprint Computer Science Distributed and Parallel Computing Systems Open access
Alexandru Iosup, Fernando A. Kuipers, Ana Lucia Vărbănescu, Paola Grosso, Animesh Trivedi, Jan S. Rellermeyer, +3 more
1citations -
Peer Review Report For: BioHackathon 2015: Semantics of data for life sciences and reproducible research [version 1; peer review: 2 approved]2020 University of Southampton peer-review Computer Science Research Data Management Practices Open access
Rutger Aldo Vos, Toshiaki Katayama, Hiroyuki Mishima, Shin Kawano, Shuichi Kawashima, Jin-Dong Kim, +68 more
0citations -
Standardising Epigenetic Data Analysis: A Prerequisite for Regulatory Uptake in Environmental Risk Assessment2026 Zenodo (CERN European Organization for Nuclear Research) article Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access
Jana Asselman, Mercedes Blázquez, Hollie Marshall, Jan Alexander Mennigen, Anna Navarro, Laia Navarro‐Martín, +4 more
0citations -
Databases for exploratory mode of RRE-Finder: A Genome-Mining Tool for Class-Independent RiPP Discovery2020 Socio-Environmental Systems Modeling dataset Medicine Microbial Natural Products and Biosynthesis Open access
Alexander Kloosterman, Kyle E. Shelton, Gilles P. van Wezel, Marnix H. Medema, Douglas A. Mitchell
0citations