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FAIR in practice: minimum metadata schema for bioinformatics analytics by machines2026 Journal of Biomedical Semantics article Computer Science Research Data Management Practices Open access
Daphne Wijnbergen, Núria Queralt-Rosiñach, Valérie Barbié, Emma Verkinderen, Nirupama Benis, Annika Jacobsen, +4 more
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Orchid fruit and root movement analyzed using 2D photographs and a bioinformatics pipeline for processing sequential 3D scans2024 Applications in Plant Sciences article Agricultural and Biological Sciences Plant Molecular Biology Research Open access
Dewi Pramanık, Lotta M. Vaskimo, Kees Joost Batenburg, Alexander Kostenko, Kevin Droppert, ERIK F. SMETS, +1 more
1citations -
The use of Foundational Ontologies in Bioinformatics - Supplementary Material2021 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
César H. Bernabé, Núria Queralt-Rosiñach, Vítor E. Silva Souza, Luiz Olavo Bonino da Silva Santos, Annika Jacobsen, Barend Mons, +1 more
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The use of Foundational Ontologies in Bioinformatics - Supplementary Material2021 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
César H. Bernabé, Núria Queralt-Rosiñach, Vítor E. Silva Souza, Luiz Olavo Bonino da Silva Santos, Annika Jacobsen, Barend Mons, +1 more
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The use of Foundational Ontologies in Bioinformatics - Supplementary Material2021 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
César H. Bernabé, Núria Queralt-Rosiñach, Vítor E. Silva Souza, Luiz Olavo Bonino da Silva Santos, Annika Jacobsen, Barend Mons, +1 more
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The use of Foundational Ontologies in Bioinformatics - SWAT4HCLS - Supplementary Material2021 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
César H. Bernabé, Núria Queralt-Rosiñach, Vítor E. Silva Souza, Luiz Olavo Bonino da Silva Santos, Annika Jacobsen, Barend Mons, +1 more
0citations -
The use of Foundational Ontologies in Bioinformatics - Supplementary Material2021 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
César H. Bernabé, Núria Queralt-Rosiñach, Vítor E. Silva Souza, Luiz Olavo Bonino da Silva Santos, Annika Jacobsen, Barend Mons, +1 more
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The use of Foundational Ontologies in Bioinformatics2022 Research Square preprint Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
César H. Bernabé, Núria Queralt-Rosiñach, Vítor E. Silva Souza, Luiz Olavo Bonino da Silva Santos, Barend Mons, Annika Jacobsen, +1 more
1citations -
In vitro and bioinformatics mechanistic-based approach for cadmium carcinogenicity understanding2020 Toxicology in Vitro article Environmental Science Heavy Metal Exposure and Toxicity Open access
Monica Oldani, Marco Fabbri, Pasquale Melchioretto, Giulia Callegaro, Paola Alessandra Fusi, Laura Gribaldo, +2 more
16citations -
Datasets and figures from the "Design and evaluation of semantically-valid negative sample integration techniques for scalable semi-automated drug repurposing prediction pipelines in rare disease research" paper (BMC-Bioinformatics)0citations
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Probing the transcriptome response to shivering in skeletal muscle using a multilayered bioinformatics approach2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Adipose Tissue and Metabolism Open access
Rosalie Baak, Guido J. E. J. Hooiveld, Patrick Schrauwen, Joris Hoeks, Reinier Raymakers, Anja van de Stolpe, +2 more
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The ELIXIR Human Copy Number Variations Community: building bioinformatics infrastructure for research2020 F1000Research article Biochemistry, Genetics and Molecular Biology Genomic variations and chromosomal abnormalities Open access
David Salgado, Irina M. Armean, Michael Baudis, Sergi Beltrán, Salvador Capella-Gutiérrez, Denise Carvalho‐Silva, +34 more
7citations