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Evaluating the effectiveness of biomedical fine-tuning for large language models on clinical tasks2025 Journal of the American Medical Informatics Association article Medicine Artificial Intelligence in Healthcare and Education Open access
Felix J. Dorfner, Amin Dada, Felix Busch, Marcus R. Makowski, Daniel Truhn, Jens Kleesiek, +3 more
40citations -
Semantic Harmonization Workflow of Health Data: Application in the Post-COVID Network Netherlands2026 Studies in health technology and informatics book-chapter Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Hajar Hasannejadasl, Bianca M. Boxma‐de Klerk, Jos Bosch, Ronald Cornet, Sander MJ van Kuijk
0citations -
CMEO: a metadata-centric ontology for clinical studies exploration and harmonization assessment2025 BMC Medical Informatics and Decision Making article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Komal Gilani, Marlo Verket, Hans‐Peter Brunner‐La Rocca, Enrico Nicolis, Katharina Marx-Schütt, Visara Urovi, +1 more
1citations -
The FAIR data point populator: collaborative FAIRification and population of FAIR data points2025 BMC Medical Informatics and Decision Making article Computer Science Research Data Management Practices Open access
Daphne Wijnbergen, Rajaram Kaliyaperumal, Luiz Olavo Bonino da Silva Santos, Barend Mons, Marco Roos, Eleni Mina
3citations -
REDCap Ontology Annotation Made Easy (ROME) – A REDCap Module for Simplified Metadata Element Annotation2026 Studies in health technology and informatics book-chapter Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Christof Meigen, Sophie Anne Inès Klopfenstein, Andrea Groselj‐Strele, Matthias Löbe, Jonathan M. Mang, Dustin Thewes, +1 more
0citations -
How do others cope? Extracting coping strategies for adverse drug events from social media2022 Journal of Biomedical Informatics article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Anne R. Dirkson, Suzan Verberne, G. van Oortmerssen, Hans A. J. Gelderblom, Wessel Kraaij
8citations -
Process mining for healthcare: Characteristics and challenges2022 Journal of Biomedical Informatics article Business, Management and Accounting Business Process Modeling and Analysis Open access
Jorge Muñoz-Gama, Niels Martin, Carlos Fernández-Llatas, Owen Ashby Johnson, Marcos Sepúlveda, Emmanuel Helm, +49 more
292citations -
Deep Learning Segmentation of the Right Ventricle in Cardiac MRI: The M&Ms Challenge2023 IEEE Journal of Biomedical and Health Informatics article Computer Science Medical Image Segmentation Techniques Open access
Carlos Martín-Isla, Víctor M. Campello, Cristian Izquierdo, Kaisar Kushibar, Carla Sendra-Balcells, Polyxeni Gkontra, +34 more
90citations -
Understanding random resampling techniques for class imbalance correction and their consequences on calibration and discrimination of clinical risk prediction models2024 Journal of Biomedical Informatics article Computer Science Imbalanced Data Classification Techniques Open access
Marco Piccininni, Maximilian Wechsung, Ben Van Calster, Jessica Lee Rohmann, Stefan Konigorski, Maarten van Smeden
42citations -
Data harmonization and federated learning for multi-cohort dementia research using the OMOP common data model: A Netherlands consortium of dementia cohorts case study2024 Journal of Biomedical Informatics article Computer Science Privacy-Preserving Technologies in Data Open access
Pedro Mateus, Justine E. F. Moonen, Magdalena Beran, Eva A. Jaarsma, Sophie M. van der Landen, Joost Heuvelink, +11 more
31citations -
De-novo FAIRification via an Electronic Data Capture system by automated transformation of filled electronic Case Report Forms into machine-readable data2021 Journal of Biomedical Informatics article Computer Science Research Data Management Practices Open access
Martijn G. Kersloot, Annika Jacobsen, Karlijn H.J. Groenen, Bruna dos Santos Vieira, Rajaram Kaliyaperumal, Ameen Abu–Hanna, +5 more
28citations -
Electronic health records (EHRs) in clinical research and platform trials: Application of the innovative EHR-based methods developed by EU-PEARL2023 Journal of Biomedical Informatics article Health Professions Electronic Health Records Systems Open access
Giulia Lombardo, Camille Couvert, Melisa Kose, Amina Begum, Cécile Spiertz, Courtney Worrell, +19 more
23citations -
How Can Interactive Process Discovery Address Data Quality Issues in Real Business Settings? Evidence from a Case Study in Healthcare2022 Journal of Biomedical Informatics article Business, Management and Accounting Business Process Modeling and Analysis Open access
Elisabetta Benevento, Davide Aloini, Wil M. P. van der Aalst
22citations -
Deep Learning-based detection of psychiatric attributes from German mental health records2022 International Journal of Medical Informatics article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Sumit Madan, Fabian Julius Zimmer, Helena Balabin, Sebastian Schaaf, Holger Fröhlich, Juliane Fluck, +4 more
18citations