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Trans-dimensional Bayesian model averaging for 13C-metabolic flux analysis: evidence-based flux inference under structural model uncertainty2026 Bioinformatics article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Johann F. Jadebeck, Anton Stratmann, Martin Beyß, Katharina Nöh
0citations -
MEMOTE for standardized genome-scale metabolic model testing2020 Nature Biotechnology article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Christian Lieven, Moritz E. Beber, Brett G. Olivier, Frank Bergmann, Meriç Ataman, Parizad Babaei, +63 more
572citations -
Genome-scale metabolic network of human carotid plaque reveals the pivotal role of glutamine/glutamate metabolism in macrophage modulating plaque inflammation and vulnerability2024 Cardiovascular Diabetology article Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases Open access
Han Jin, Cheng Zhang, Jan Nagenborg, Peter J. Juhasz, Adele V. Ruder, Cornelis J. J. M. Sikkink, +8 more
20citations -
A recurrent neural network architecture to model physical activity energy expenditure in older people2022 Data Mining and Knowledge Discovery article Computer Science Context-Aware Activity Recognition Systems Open access
Stylianos Paraschiakos, Cláudio Rebelo de Sá, Jeremiah Okai, P. Eline Slagboom, Marian Beekman, Arno Knobbe
31citations -
Predicting metabolic preferences through transcriptomics: a data-driven approach to align metabolic signatures with gene expression profiles2025 Biochemistry and Biophysics Reports article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Lente J. S. Lerink, Marleen J de Winter, Ian P.J. Alwayn, Rutger J. Ploeg, John F. Mulvey, Jan H.N. Lindeman
1citations -
XomicsToModel: omics data integration and generation of thermodynamically consistent metabolic models2025 Nature Protocols article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
German Preciat, Agnieszka B. Wegrzyn, Xi Luo, Ines Thiele, Thomas Hankemeier, Ronan M. T. Fleming
15citations -
Breathomics profiling of metabolic pathways affected by major depression: Possibilities and limitations2022 Frontiers in Psychiatry article Biochemistry, Genetics and Molecular Biology Metabolomics and Mass Spectrometry Studies Open access
Laila Gbaoui, Melanie Fachet, Marian Lüno, Gabriela Meyer-Lotz, Thomas Frodl, Christoph Hoeschen
11citations -
Systematic comparison of temporal hepatotoxicant-induced gene network responses across 3 liver test systems2026 Toxicological Sciences article Pharmacology, Toxicology and Pharmaceutics Drug-Induced Hepatotoxicity and Protection Open access
Tamara Y Danilyuk, Marou Schouten, Elsje J Burgers, Barira Islam, Joost B. Beltman, Peter Bouwman, +2 more
0citations -
Tricarboxylic Acid Cycle Regulation of Metabolic Program, Redox System, and Epigenetic Remodeling for Bone Health and Disease2024 Antioxidants article Biochemistry, Genetics and Molecular Biology Bone Metabolism and Diseases Open access
Wei‐Shiung Lian, Re‐Wen Wu, Yu-Han Lin, Yushan Chen, Holger Jahr, Feng‐Sheng Wang
24citations -
Physiologically‐based pharmacokinetic modeling of quinidine to establish a CYP3A4 , P‐gp, and CYP2D6 drug–drug–gene interaction network2023 CPT Pharmacometrics & Systems Pharmacology article Pharmacology, Toxicology and Pharmaceutics Pharmacogenetics and Drug Metabolism Open access
Denise Feick, Simeon Rüdesheim, Fatima Zahra Marok, Dominik Selzer, Helena Leonie Hanae Loer, Donato Teutonico, +6 more
12citations -
Metabolic variation in Caribbean giant barrel sponges: Influence of age and sea-depth2021 Marine Environmental Research article Biochemistry, Genetics and Molecular Biology Marine Sponges and Natural Products Open access
Lina M. Bayona, Min Sun Kim, Thomas Swierts, Geum‐Sook Hwang, Nicole Joy de Voogd, Young Hae Choi
6citations -
Integrative multiomics analysis of human atherosclerosis reveals a serum response factor‐driven network associated with intraplaque hemorrhage2021 Clinical and Translational Medicine article Medicine Cerebrovascular and Carotid Artery Diseases Open access
Han Young Jin, Pieter Goossens, Peter J. Juhasz, Wouter J. Eijgelaar, Marco Manca, Joël Karel, +14 more
100citations -
Establishment of a Pre-vascularized 3D Lung Cancer Model in Fibrin Gel—Influence of Hypoxia and Cancer-Specific Therapeutics2021 Frontiers in Bioengineering and Biotechnology article Biochemistry, Genetics and Molecular Biology Angiogenesis and VEGF in Cancer Open access
Caroline Kniebs, Anja E. Luengen, Daniel Guenther, Christian Gabriel Cornelissen, Thomas Schmitz‐Rode, Stefan Jockenhoevel, +1 more
16citations -
Personalized whole‐body models integrate metabolism, physiology, and the gut microbiome2020 Molecular Systems Biology article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access cited by 4 patents
Ines Thiele, Swagatika Sahoo, Almut Heinken, Johannes Hertel, Laurent Heirendt, Maike Kathrin Aurich, +1 more
218citations -
Metabolomic profiles predict individual multidisease outcomes2022 Nature Medicine article Biochemistry, Genetics and Molecular Biology Metabolomics and Mass Spectrometry Studies Open access cited by 2 patents
Thore Buergel, Jakob Steinfeldt, Greg Ruyoga, Maik Pietzner, Daniele Bizzarri, Dina Vojinović, +26 more
399citations