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The use of Foundational Ontologies in Bioinformatics - Supplementary Material2021 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
César H. Bernabé, Núria Queralt-Rosiñach, Vítor E. Silva Souza, Luiz Olavo Bonino da Silva Santos, Annika Jacobsen, Barend Mons, +1 more
0citations -
The use of Foundational Ontologies in Bioinformatics - Supplementary Material2021 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
César H. Bernabé, Núria Queralt-Rosiñach, Vítor E. Silva Souza, Luiz Olavo Bonino da Silva Santos, Annika Jacobsen, Barend Mons, +1 more
0citations -
The use of Foundational Ontologies in Bioinformatics - Supplementary Material2021 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
César H. Bernabé, Núria Queralt-Rosiñach, Vítor E. Silva Souza, Luiz Olavo Bonino da Silva Santos, Annika Jacobsen, Barend Mons, +1 more
0citations -
The use of Foundational Ontologies in Bioinformatics - Supplementary Material2021 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
César H. Bernabé, Núria Queralt-Rosiñach, Vítor E. Silva Souza, Luiz Olavo Bonino da Silva Santos, Annika Jacobsen, Barend Mons, +1 more
0citations -
Semantic modeling of a cyber-physical biological production platform2022 IEEE International Conference on Emerging Technologies and Factory Automation (ETFA) conference-paper Computer Science Semantic Web and Ontologies
Simon Pieske, Werner Herfs, Martin Zenke, Simon Storms, Christian Brecher
2citations -
biopragmatics/pyobo: v0.12.132026 Zenodo (CERN European Organization for Nuclear Research) software Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Charles Tapley Hoyt, Benjamin M. Gyori, Chris J Mungall, Daniel Domingo-Fernández, jplfaria, Tenzin Nanglo, +3 more
1citations -
biopragmatics/pyobo: v0.12.152026 Zenodo (CERN European Organization for Nuclear Research) software Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Charles Tapley Hoyt, Benjamin M. Gyori, Chris J Mungall, Daniel Domingo-Fernández, jplfaria, Tenzin Nanglo, +3 more
0citations -
monarch-initiative/monarch-app: v1.24.02026 Zenodo (CERN European Organization for Nuclear Research) software Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
varun_divya, Kevin Schaper, Vincent Rubinetti, Sierra A. Taylor Moxon, Corey Cox, Patrick Golden, +11 more
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Ontology pre-training improves machine learning-based predictions for metabolites2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science Computational Drug Discovery Methods Open access
Charlotte Tumescheit, Martin Glauer, Simon Flügel, Martin F. Larralde, Fabian Neuhaus, Till Mossakowski, +1 more
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An Update on MRMAssayDB: A Comprehensive Resource for Targeted Proteomics Assays in the Community2021 Journal of Proteome Research article Chemistry Advanced Proteomics Techniques and Applications Open access
Pallab Bhowmick, Simon Roome, Christoph H. Borchers, David R. Goodlett, Yassene Mohammed
23citations -
Genolator enables protein function interpretation using a multimodal large language model fusing genomic and structural interpretation with natural language interaction2026 Genome biology article Biochemistry, Genetics and Molecular Biology Machine Learning in Bioinformatics Open access
Martin Danner, Tanhim Islam, Matthias Begemann, Florian Kraft, Miriam Elbracht, Ingo Kurth, +1 more
0citations -
Genolator: A Multimodal Large Language Model Fusing Natural Language, Genomic, and Structural Tokens for Protein Function Interpretation2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Machine Learning in Bioinformatics Open access
Martin Danner, Tanhim Islam, Matthias Begemann, Florian Kraft, Miriam Elbracht, Ingo Kurth, +1 more
0citations -
Metadata harmonization–Standards are the key for a better usage of omics data for integrative microbiome analysis2022 Environmental Microbiome article Computer Science Research Data Management Practices Open access
Tomislav Cernava, Daria Rybakova, François Buscot, Thomas Clavel, Alice Carolyn McHardy, Fernando Meyer, +45 more
59citations -
monarch-initiative/monarch-app: v1.26.0-rc52026 Zenodo (CERN European Organization for Nuclear Research) software Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
varun_divya, Kevin Schaper, Vincent Rubinetti, Patrick Golden, Sierra Moxon, Corey Cox, +12 more
0citations