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bio.tools: an expanded web service for research software in the life sciences2026 Nucleic Acids Research article Decision Sciences Scientific Computing and Data Management Open access
Ana Mendes, Hans Ienasescu, Christian A T Andersen, Erin Calhoun, Piotr Jaroslaw Chmura, Kathleen Collier, +18 more
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FAIR in practice: minimum metadata schema for bioinformatics analytics by machines2026 Journal of Biomedical Semantics article Computer Science Research Data Management Practices Open access
Daphne Wijnbergen, Núria Queralt-Rosiñach, Valérie Barbié, Emma Verkinderen, Nirupama Benis, Annika Jacobsen, +4 more
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iFeatureOmega: an integrative platform for engineering, visualization and analysis of features from molecular sequences, structural and ligand data sets2022 Nucleic Acids Research article Biochemistry, Genetics and Molecular Biology Machine Learning in Bioinformatics Open access
Zhen Chen, Xuhan Liu, Pei Zhao, Chen Li, Yanan Wang, Fuyi Li, +7 more
102citations -
Advances and challenges in cell–cell communication inference: a comprehensive review of tools, resources, and future directions2025 Briefings in Bioinformatics review Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Giulia Cesaro, James Shiniti Nagai, Gnoato Nicolò, Alice Chiodi, Gaia Tussardi, Vanessa Klöker, +6 more
44citations -
Databases for exploratory mode of RRE-Finder: A Genome-Mining Tool for Class-Independent RiPP Discovery2020 Socio-Environmental Systems Modeling dataset Medicine Microbial Natural Products and Biosynthesis Open access
Alexander Kloosterman, Kyle E. Shelton, Gilles P. van Wezel, Marnix H. Medema, Douglas A. Mitchell
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Peer Review Report For: BioHackathon 2015: Semantics of data for life sciences and reproducible research [version 1; peer review: 2 approved]2020 University of Southampton peer-review Computer Science Research Data Management Practices Open access
Rutger Aldo Vos, Toshiaki Katayama, Hiroyuki Mishima, Shin Kawano, Shuichi Kawashima, Jin-Dong Kim, +68 more
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pombase/fypo: v2026-07-022026 Zenodo (CERN European Organization for Nuclear Research) software Biochemistry, Genetics and Molecular Biology Fungal and yeast genetics research Open access
Val Wood, Kim Rutherford, Midori A. Harris, Manuel Lera-Ramírez, PCarme, Nicolas Matentzoglu, +4 more
0citations