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A comprehensive mouse kidney atlas enables rare cell population characterization and robust marker discovery2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Claudio Novella-Rausell, Magda Grudniewska, Dorien J.M. Peters, Ahmed Essam Mahfouz
5citations -
Integrating gene expression analysis and ecophysiological responses to water deficit in leaves of tomato plants2024 Scientific Reports article Agricultural and Biological Sciences Plant Stress Responses and Tolerance Open access
Giovanni Bortolami, Tobias de Werk, Maximilian Larter, Ajaree Thonglim, Bernd Mueller‐Roeber, Salma Balazadeh, +1 more
5citations -
Functional analysis reveals driver cooperativity and novel mechanisms in endometrial carcinogenesis2023 EMBO Molecular Medicine article Medicine Endometrial and Cervical Cancer Treatments Open access
Matthew Brown, Alicia Leon, Katarzyna Kedzierska, C. Moore, Hayley L. Belnoue-Davis, Susanne Flach, +6 more
5citations -
Cell-type-specific execution of effector-triggered immunity2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Plant-Microbe Interactions and Immunity Open access
Himanshu Chhillar, Leonardo Jo, Amey Redkar, Kaisa Kajala, Jonathan D. G. Jones, Pingtao Ding
5citations -
Latent plasticity of the human pancreas across development, health, and disease2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Pancreatic function and diabetes Open access
Elisabetta Mereu, Diego Balboa, Johannes Liebig, A. Herrero, Anna Martinez Casals, Mariya Mardamshina, +37 more
5citations -
Cross-species analyses reveal RORγt-expressing dendritic cells are a lineage of antigen presenting cells conserved across tissues2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology Immunotherapy and Immune Responses Open access cited by 3 patents
Hamsa Narasimhan, Maria Lucia Richter, Ramin Shakiba, Nikos E. Papaioannou, Christina Stehle, Isabel Ulmert, +12 more
5citations -
RNA genome expansion up to 64 kb in nidoviruses is host constrained and associated with new modes of replicase expression2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Animal Virus Infections Studies Open access
Benjamin W. Neuman, Alexandria Smart, Josef Vaas, Ralf F. W. Bartenschlager, Stefan Seitz, Alexander E. Gorbalenya, +2 more
4citations -
MMR vaccination induces a trained immunity program characterized by functional and metabolic reprogramming of γδ T cells2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology Immune responses and vaccinations
Rutger Jan Röring, Priya A. Debisarun, Javier Botey-Bataller, Tsz Kin Suen, Ozlem Pinar Bulut, Gizem Kılıç, +19 more
4citations -
The Human Pathogen Mycobacterium tuberculosis and the Fish Pathogen Mycobacterium marinum Trigger a Core Set of Late Innate Immune Response Genes in Zebrafish Larvae
Ron P. Dirks, Anita Ordas, Susanne A. Jong-Raadsen, Sebastiaan A. Brittijn, Mariëlle C. Haks, Christiaan V. Henkel, +8 more
4citations -
Precision T cell correction platform for inborn errors of immunity2025 Molecular Therapy article Biochemistry, Genetics and Molecular Biology CRISPR and Genetic Engineering Open access
Katariina Mamia, Sólrún Kolbeinsdóttir, Kornel Labun, Zhuokun Li, Anna Zofia Komisarczuk, Salla Keskitalo, +23 more
4citations -
Spatial patterning of transcriptional and regulatory programs in the primate subcortex2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Shu Dan, Meghan A. Turner, Michael DeBerardine, Lakme Caceres, Victor E. Nieto-Caballero, Jessica Schembri, +29 more
4citations -
EOMES and IL-10 regulate anti-tumor activity of PD-1 + CD4 + T-cells in B-cell Non-Hodgkin lymphoma2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology T-cell and B-cell Immunology Open access
Philipp M. Roessner, Laura Llaó Cid, Ekaterina Lupar, Tobias Roider, Marie Bordas, Christoph Schifflers, +10 more
4citations -
Fibrosis-Related Gene Profiling in Liver Biopsies of PiZZ α1-Antitrypsin Children with Different Clinical Courses2023 International Journal of Molecular Sciences article Medicine Liver physiology and pathology Open access
Jan C. Kamp, Naomi Kappe, Carlos Fernández Moro, Jan Fuge, Mark Kühnel, Sabine Wrenger, +9 more
4citations -
Benchmarking Variational AutoEncoders on cancer transcriptomics data2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Gene expression and cancer classification Open access
Mostafa Eltager, Tamim Abdelaal, Mohammed Charrout, Ahmed Essam Mahfouz, Marcel J. T. Reinders, Stavros Makrodimitris
4citations -
Glycosylation Analysis of Urinary Peptidome Highlights IGF2 Glycopeptides in Association with CKD2023 International Journal of Molecular Sciences article Biochemistry, Genetics and Molecular Biology Glycosylation and Glycoproteins Research Open access
Sonnal Lohia, Agnieszka Latosińska, Jérôme Zoidakis, Manousos Makridakis, Harald Mischak, Griet Glorieux, +2 more
4citations -
Transcriptomic changes and mitochondrial toxicity in response to acute and repeat dose treatment with brequinar in human liver and kidney in vitro models2025 Toxicology in Vitro article Pharmacology, Toxicology and Pharmaceutics Drug-Induced Hepatotoxicity and Protection Open access
Tamara Meijer, Bas ter Braak, Liesanne Wolters, Steven J. Kunnen, Barira Islam, Ilinca Suciu, +8 more
4citations -
Down‐regulation of human long non‐coding RNA LINC01187 is associated with nephropathies2023 Journal of Cellular and Molecular Medicine article Biochemistry, Genetics and Molecular Biology Cancer-related molecular mechanisms research Open access
Theodora Manolakou, Valeria Kaltezioti, Niki Prakoura, Panagiotis Kavvadas, Simone Reichelt‐Wurm, Harikleia Gakiopoulou, +10 more
4citations -
Capture of Post-Pluripotency Human Neuromesodermal and Neural Tube Axial Stem Cell States2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Pluripotent Stem Cells Research Open access
Dolunay Kelle, Enes Ugur, Ejona Rusha, Dmitry Shaposhnikov, Alessandra Livigni, Sandra Horschitz, +16 more
4citations