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fluxTrAM: Integration of tracer-based metabolomics data into atomically resolved genome-scale metabolic networks for metabolic flux analysis2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Luojiao Huang, German Preciat, Jesús Alarcón-Gil, Edinson Lucumi Moreno, Agnieszka B. Wegrzyn, Ines Thiele, +4 more
1citations -
Future Computer Systems and Networking Research in the Netherlands: A Manifesto2022 arXiv (Cornell University) preprint Computer Science Distributed and Parallel Computing Systems Open access
Alexandru Iosup, Fernando A. Kuipers, Ana Lucia Vărbănescu, Paola Grosso, Animesh Trivedi, Jan S. Rellermeyer, +3 more
1citations -
Reproduction package for the paper "Transient study using LoTSS – framework development and preliminary results"2023 arXiv (Cornell University) preprint Physics and Astronomy Radio Astronomy Observations and Technology Open access
Iris de Ruiter, Zachary Samuel Meyers, A. Rowlinson, T. W. Shimwell, David Ruhe, Ralph A. M. J. Wijers
1citations -
The IBEX Knowledge-Base: A Community Resource Enabling Adoption and Development of Immunofluorescence Imaging Methods2026 eLife preprint Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access
Ziv Rafael Yaniv, Ifeanyichukwu U. Anidi, Leanne Arakkal, Armando Arroyo-Mejías, Rebecca T. Beuschel, Katy Börner, +56 more
0citations -
Enhanced cell wall mechanics in VirtualLeaf enable realistic simulations of plant tissue dynamics2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Polysaccharides and Plant Cell Walls Open access
Richard W. van Nieuwenhoven, Bruno Hay Mele, Roeland M. H. Merks, Ruth Großeholz
0citations -
PyHEP.dev 2024 Workshop Summary Report, August 26-30 2024, Aachen, Germany2024 arXiv (Cornell University) preprint Computer Science Computational Physics and Python Applications Open access
A. A. Alshehri, N. Eich, Martin Erdmann, Jonas Nathanael Eschle, P. Fackeldey, M Farkas, +16 more
0citations -
Euclid preparation. LXXIV. Euclidised observations of Hubble Frontier Fields and CLASH galaxy clusters2025 arXiv (Cornell University) preprint Physics and Astronomy Galaxies: Formation, Evolution, Phenomena Open access
P. Bergamini, Massimo Meneghetti, D. Abriola, R. Gavazzi, Patrick Hudelot, L. Leuzzi, +71 more
0citations -
Comparison of Illumina Versus Nanopore 16S rRNA Gene Sequencing of the Human Nasal Microbiota2020 Preprints.org preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Astrid P. Heikema, Deborah Horst-Kreft, Stefan A. Boers, Rick Jansen, Saskia Hiltemann, Willem de Koning, +6 more
28citations -
Normative Modeling of Brain Morphometry Across the Lifespan Using CentileBrain: Algorithm Benchmarking and Model Optimization2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Functional Brain Connectivity Studies Open access
Ruiyang Ge, Yuetong Yu, Yi Xuan Qi, Yunan Vera Fan, Shiyu Chen, Chuntong Gao, +92 more
21citations -
immuneML: an ecosystem for machine learning analysis of adaptive immune receptor repertoires2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology vaccines and immunoinformatics approaches Open access
Milena Pavlović, Lonneke Scheffer, Keshav Motwani, Chakravarthi Kanduri, Radmila Kompova, Nikolay Vazov, +37 more
17citations -
Bird song comparison using deep learning trained from avian perceptual judgments2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Animal Vocal Communication and Behavior Open access
Lies Zandberg, Veronica Morfi, Julia M. George, David F. Clayton, Dan Stowell, Robert F. Lachlan
7citations -
Grand Challenges for Predictive Modeling in Small Molecule Drug Discovery2026 ChemRxiv preprint Pharmacology, Toxicology and Pharmaceutics Computational Drug Discovery Methods Open access
Connor W. Coley, Marco De Vivo, Willem Jespers, Ashutosh S. Jogalekar, S Roy Kimura, Lucien Koenekoop, +6 more
6citations