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Papers per year
Papers 44
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Accurate prediction of HLA class II antigen presentation across all loci using tailored data acquisition and refined machine learning2023 Science Advances article Biochemistry, Genetics and Molecular Biology vaccines and immunoinformatics approaches Open access
Jonas Birkelund Nilsson, Saghar Kaabinejadian, Hooman Yari, Michel G.D. Kester, Peter van Balen, William H. Hildebrand, +1 more
170citations -
Identification and characterization of a SARS-CoV-2 specific CD8+ T cell response with immunodominant features2021 Nature Communications article Biochemistry, Genetics and Molecular Biology vaccines and immunoinformatics approaches Open access
Anastasia Gangaev, Steven L. C. Ketelaars, Olga I. Isaeva, Sanne Patiwael, Anna Dopler, Kelly Hoefakker, +14 more
122citations -
The immuneML ecosystem for machine learning analysis of adaptive immune receptor repertoires2021 Nature Machine Intelligence article Biochemistry, Genetics and Molecular Biology vaccines and immunoinformatics approaches Open access
Milena Pavlović, Lonneke Scheffer, Keshav Motwani, Chakravarthi Kanduri, Radmila Kompova, Nikolay Vazov, +36 more
88citations -
STAPLER: Efficient learning of TCR-peptide specificity prediction from full-length TCR-peptide data2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology vaccines and immunoinformatics approaches Open access cited by 1 patent
Bjørn P. Y. Kwee, Marius Messemaker, Eric Marcus, Giacomo Oliveira, Wouter Scheper, Catherine J. Wu, +2 more
41citations -
Immunopeptidome Analysis of HLA-DPB1 Allelic Variants Reveals New Functional Hierarchies2020 The Journal of Immunology article Biochemistry, Genetics and Molecular Biology vaccines and immunoinformatics approaches Open access cited by 2 patents
Peter van Balen, Michel G.D. Kester, Wendy de Klerk, Pietro Crivello, Esteban Arrieta‐Bolaños, Arnoud H. de Ru, +6 more
39citations -
Peptide Binding to HLA-E Molecules in Humans, Nonhuman Primates, and Mice Reveals Unique Binding Peptides but Remarkably Conserved Anchor Residues2020 The Journal of Immunology article Biochemistry, Genetics and Molecular Biology vaccines and immunoinformatics approaches Open access cited by 1 patent
Paula Ruibal, Kees L. M. C. Franken, Krista E. van Meijgaarden, Joeri J. F. van Loon, Dirk van der Steen, Mirjam H.M. Heemskerk, +2 more
38citations -
A functionally validated TCR-pMHC database for TCR specificity model development2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology vaccines and immunoinformatics approaches Open access
Marius Messemaker, Bjørn P. Y. Kwee, Živa Moravec, Daniel Álvarez Salmoral, Jos H. M. Urbanus, Sam de Paauw, +12 more
31citations -
Human T cells recognize HLA-DP–bound peptides in two orientations2022 Proceedings of the National Academy of Sciences article Biochemistry, Genetics and Molecular Biology vaccines and immunoinformatics approaches Open access
Sebastian Klobuch, Jia Jia Lim, Peter van Balen, Michel G.D. Kester, Wendy de Klerk, Arnoud H. de Ru, +8 more
26citations -
Identification of HLA-E Binding Mycobacterium tuberculosis–Derived Epitopes through Improved Prediction Models2022 The Journal of Immunology article Biochemistry, Genetics and Molecular Biology vaccines and immunoinformatics approaches Open access
Paula Ruibal, Kees L. M. C. Franken, Krista E. van Meijgaarden, Marjolein van Wolfswinkel, Ian Derksen, Ferenc A. Scheeren, +11 more
21citations -
Promiscuity of Peptides Presented in HLA-DP Molecules from Different Immunogenicity Groups Is Associated With T-Cell Cross-Reactivity2022 Frontiers in Immunology article Biochemistry, Genetics and Molecular Biology vaccines and immunoinformatics approaches Open access
Aicha Laghmouchi, Michel G.D. Kester, Conny Hoogstraten, Lois Hageman, Wendy de Klerk, Wesley Huisman, +7 more
18citations -
immuneML: an ecosystem for machine learning analysis of adaptive immune receptor repertoires2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology vaccines and immunoinformatics approaches Open access
Milena Pavlović, Lonneke Scheffer, Keshav Motwani, Chakravarthi Kanduri, Radmila Kompova, Nikolay Vazov, +37 more
17citations -
Population matched (PM) germline allelic variants of immunoglobulin ( IG ) loci: New pmIG database to better understand IG repertoire and selection processes in disease and vaccination2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology vaccines and immunoinformatics approaches Open access
Indu Khatri, Magdalena A. Berkowska, Erik B. van den Akker, Cristina Teodósio, Marcel J. T. Reinders, Jacques J. M. van Dongen
14citations -
Discovery of HLA-E-Presented Epitopes: MHC-E/Peptide Binding and T-Cell Recognition2022 Methods in molecular biology book-chapter Biochemistry, Genetics and Molecular Biology vaccines and immunoinformatics approaches Open access
Paula Ruibal, Kees L. M. C. Franken, Krista E. van Meijgaarden, Lucy C. Walters, Andrew James McMichael, Geraldine M. A. Gillespie, +2 more
13citations -
Rational design of a hydrolysis-resistant mycobacterial phosphoglycolipid antigen presented by CD1c to T cells2021 Journal of Biological Chemistry article Biochemistry, Genetics and Molecular Biology vaccines and immunoinformatics approaches Open access
Josephine F. Reijneveld, Laura Marino, Thinh-Phat Cao, Tan‐Yun Cheng, Dennis Dam, Adam Shahine, +9 more
12citations -
Response: Commentary: An In Silico–In Vitro Pipeline Identifying an HLA-A*02:01+ KRAS G12V+ Spliced Epitope Candidate for a Broad Tumor-Immune Response in Cancer Patients2021 Frontiers in Immunology editorial Biochemistry, Genetics and Molecular Biology vaccines and immunoinformatics approaches Open access cited by 2 patents
Michele Mishto, Guillermo Rodriguez-Hernandez, Jacques Neefjes, Henning Urlaub, Juliane Liepe
10citations -
Thermal‐exchange HLA‐E multimers reveal specificity in HLA‐E and NKG2A / CD94 complex interactions2022 Immunology article Biochemistry, Genetics and Molecular Biology vaccines and immunoinformatics approaches Open access
Paula Ruibal, Ian Derksen, Marjolein van Wolfswinkel, Linda Voogd, Kees L. M. C. Franken, Angela F. El Hebieshy, +6 more
9citations -
Site‐directed mutagenesis of HLA molecules reveals the functional epitope of a human HLA‐A1 / A36 ‐specific monoclonal antibody2022 HLA article Biochemistry, Genetics and Molecular Biology vaccines and immunoinformatics approaches Open access cited by 2 patents
Shi‐Yuan Meng, Suzanne Bezstarosti, Ujjwala Singh, Michelle Yap, Laura Scott, Naiiry Petrosyan, +10 more
7citations -
Modeling Peptide–Protein Interactions by a Logo-Based Method: Application in Peptide–HLA Binding Predictions2024 Molecules article Biochemistry, Genetics and Molecular Biology vaccines and immunoinformatics approaches Open access
Irini Atanas Doytchinova, Mariyana Atanasova, Antonio Fernandez, Francisco Javier Moreno, Frits Koning, Ivan Dimitrov
6citations
Most active Aachen authors
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Mirjam H.M. Heemskerk 10,104 citations overall10 papers
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Michel G.D. Kester 5,796 citations overall10 papers
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Kees L. M. C. Franken 10,700 citations overall8 papers
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Jacques Neefjes 40,820 citations overall7 papers
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Ferenc A. Scheeren 8,244 citations overall7 papers
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Ian Derksen 65 citations overall7 papers
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Peter A. van Veelen 18,468 citations overall6 papers
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Tom H. M. Ottenhoff 38,809 citations overall5 papers
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Huib Ovaa 23,982 citations overall5 papers
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Simone A. Joosten 7,878 citations overall5 papers
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Paula Ruibal 977 citations overall5 papers
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Cilia R. Pothast 405 citations overall5 papers
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Wesley Huisman 347 citations overall5 papers
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Jolien J. Luimstra 273 citations overall5 papers
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Anneloes van der Plas - van Duijn 182 citations overall5 papers