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The Molecular Human – A Roadmap of Molecular Interactions Linking Multiomics Networks with Disease Endpoints2022 medRxiv preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Anna Halama, Shaza B. Zaghlool, Gaurav Thareja, Sara Abdul Kader, Wadha Al Muftha, Marjonneke J. Mook-Kanamori, +17 more
5citations -
A lymph node-to-tumour PDL1 + macrophage circuit antagonizes dendritic cell immunotherapy2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology Immunotherapy and Immune Responses Open access
Jenny Sprooten, Isaure Vanmeerbeek, Angeliki Datsi, Jannes Govaerts, Daniel Borràs, Stefan Naulaerts, +17 more
4citations -
1 H-NMR metabolomics-guided DNA methylation mortality predictors2023 medRxiv preprint Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access
Daniele Bizzarri, Marcel J. T. Reinders, Lieke M Kuiper, Marian Beekman, Joris Deelen, Joyce B. J. van Meurs, +7 more
2citations -
Functional and spatial proteomics profiling reveals intra- and intercellular signaling crosstalk in colorectal cancer2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Colorectal Cancer Treatments and Studies Open access
Christina Plattner, Giorgia Lamberti, Peter Blattmann, Alexander Kirchmair, Dietmar Rieder, Zuzana Loncová, +23 more
0citations -
Rewired type I IFN signaling is linked to age-dependent differences in COVID-192024 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology interferon and immune responses Open access
Sophia Brumhard, Sebastian Wisniewski, Philipp Georg, David Hillus, Anna Luisa Hiller, Rosario Astaburuaga-García, +25 more
0citations -
scMEGA: Single-cell Multiomic Enhancer-based Gene Regulatory Network Inference2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access
Zhijian Li, James Shiniti Nagai, Christoph Kuppe, Rafael Kramann, Ivan G. Costa
0citations -
Metabolic predictors of phenotypic traits can replace and complement measured clinical variables in transcriptome-wide association studies2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Metabolomics and Mass Spectrometry Studies Open access
Anna Niehues, Daniele Bizzarri, Marcel J. T. Reinders, P. Eline Slagboom, Alain J. van Gool, Erik B. van den Akker, +1 more
0citations -
Highly Repeatable Tissue Proteomics for Kidney Transplant Pathology: Technical and Biological Validation of Protein Analysis using LC-MS/MS2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Chemistry Advanced Proteomics Techniques and Applications Open access
Rianne Hofstraat, Kristina Marx, Renata Blatnik, Nike Claessen, Hessel Peters Sengers, Sandrine Florquin, +2 more
3citations -
PlantMetWiki: a FAIR knowledge graph for plant metabolic pathway cross-species representation and integration2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Elena Del Pup, M Muller, Marvin Martens, Egon Willighagen, Marnix H. Medema, Denise Slenter, +1 more
0citations -
Cross-species analyses reveal RORγt-expressing dendritic cells are a lineage of antigen presenting cells conserved across tissues2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology Immunotherapy and Immune Responses Open access cited by 3 patents
Hamsa Narasimhan, Maria Lucia Richter, Ramin Shakiba, Nikos E. Papaioannou, Christina Stehle, Isabel Ulmert, +12 more
5citations -
The Network Zoo: a multilingual package for the inference and analysis of biological networks2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access
Marouen Ben Guebila, Tian Wang, Camila M. Lopes‐Ramos, Viola Fanfani, Deborah A. Weighill, Rebekka Burkholz, +17 more
1citations -
Multiomic profiling of medulloblastoma reveals subtype-specific targetable alterations at the proteome and N-glycan level2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Glioma Diagnosis and Treatment Open access
Hannah Voß, Shweta Godbole, Simon Schlumbohm, Yannis Schumann, Martin Mynarek, Stefan Rutkowski, +14 more
1citations -
Context-dependent molecular responses to heterogeneous metabolic disease traits2026 medRxiv preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Theodora-Dafni Michalettou, Sapna Sharma, Natalie N. Atabaki, Juan J. Fernandez-Tajes, Mun‐Gwan Hong, Jonathan Adam, +34 more
0citations -
The Neurolipid Atlas: a lipidomics resource for neurodegenerative diseases uncovers cholesterol as a regulator of astrocyte reactivity impaired by ApoE42024 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Alzheimer's disease research and treatments Open access
Femke M. Feringa, Sascha Koppes-den Hertog, Lian Y. Wang, Rico J. E. Derks, Iris Daphne Kruijff, Lena Erlebach, +21 more
22citations -
From Large Language Models to Knowledge Graphs for Biomarker Discovery in Cancer2023 arXiv (Cornell University) preprint Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Md. Rezaul Karim, Lina Molinas Comet, Md Shajalal, Oya Beyan, Dietrich Rebholz‐Schuhmann, Stefan Decker
3citations -
Intestinal transkingdom analysis on the impact of antibiotic perturbation in health and critical illness2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Bastiaan W. Haak, Ricard Argelaguet, Cormac M. Kinsella, Robert F. J. Kullberg, Jacqueline M. Lankelma, Theodorus B. M. Hakvoort, +10 more
1citations -
Modelling eNvironment for Isoforms (MoNvIso): A general platform to predict structural determinants of protein isoforms in genetic diseases2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics Open access
Francesco Oliva, Francesco Musiani, Alejandro Giorgetti, Silvia De Rubeis, Oksana Sorokina, J. Douglas Armstrong, +2 more
0citations -
Single-cell multiome uncovers differences in glycogen metabolism underlying species-specific speed of development2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Pluripotent Stem Cells Research Open access
Alexandra de la Porte, Julia Schröder, Moritz Thomas, Johanna Geuder, Michael Sterr, Leslie E. Sanderson, +5 more
1citations -
Shifts in carbon partitioning by photosynthetic activity increase terpenoid synthesis in glandular trichomes2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Plant biochemistry and biosynthesis Open access
Nima P. Saadat, Marvin van Aalst, Alejandro Brand, Oliver Ebenhöh, Alain F. Tissier, Anna Matuszyńska
0citations