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The GA4GH Phenopacket schema: A computable representation of clinical data for precision medicine2021 medRxiv preprint Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Julius O.B. Jacobsen, Michael Baudis, Gareth S Baynam, J. Beckmann, Sergi Beltrán, Tiffany J. Callahan, +41 more
14citations -
SpaceWalker: Interactive Gradient Exploration for Spatial Transcriptomics Data2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Chang Li, Julian Thijssen, Tamim Abdelaal, Thomas Höllt, Boudewijn P. F. Lelieveldt
2citations -
scTopoGAN: unsupervised manifold alignment of single-cell data2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Akash Kumar Singh, Marcel J. T. Reinders, Ahmed Essam Mahfouz, Tamim Abdelaal
1citations -
Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Mehdi Joodaki, Mina Shaigan, Roman David Bülow, Christoph Kuppe, David Laurin Hölscher, Mingbo Cheng, +9 more
8citations -
GraphHDBSCAN*: Graph-based Hierarchical Clustering on High Dimensional Single-cell RNA Sequencing Data2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Seyed Ardalan Ghoreishi, Aleksandra Szmigiel, James Shiniti Nagai, Ivan G. Costa, Arthur Zimek, Ricardo J. G. B. Campello
1citations -
Normalization strategies for lipidome data in cell line panels2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Metabolomics and Mass Spectrometry Studies Open access
Hanneke Leegwater, Zhengzheng Zhang, Xiaobing Zhang, Thomas Hankemeier, Amy C. Harms, Annelien J.M. Zweemer, +2 more
4citations -
DAISIEprep: an R package for the extraction and formatting of data for the island biogeography model DAISIE2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Environmental Science Ecology and Vegetation Dynamics Studies Open access
Joshua W. Lambert, Lizzie Roeble, Théo Pannetier, Rampal S. Etienne, Luís Valente
0citations -
BioDCASE: Using data challenges to make community advances in computational bioacoustics2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science Music and Audio Processing Open access
Dan Stowell, Ester Vidaña-Vila, Inês Nolasco, Ben McEwen, Lucie Jean-Labadye, Yasmine Benhamadi, +15 more
1citations -
From Idiographic to Nomothetic Prediction and Back: Leveraging big data for real-time stress prediction2025 Zenodo (CERN European Organization for Nuclear Research) preprint Psychology Emotion and Mood Recognition Open access
Rayyan Tutunji, Carlotta Rieble, Ricarda K. K. Proppert, Zachary Daniel Cohen, Nicholas C. Jacobson, Eiko I. Fried
0citations -
From Idiographic to Nomothetic Prediction and Back: Leveraging big data for real-time stress prediction2025 Zenodo (CERN European Organization for Nuclear Research) preprint Psychology Emotion and Mood Recognition Open access
Rayyan Tutunji, Carlotta Rieble, Ricarda K. K. Proppert, Zachary Daniel Cohen, Nicholas C. Jacobson, Eiko I. Fried
0citations -
Benchmarking Imputation Methods for Single-Cell RNA Sequencing Data Using Peripheral Blood Mononuclear Cells from Acute Myocardial Infarction Patients0citations
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Quantum Log-Determinant Methods for Torsion-Sensitive Topological Data Analysis2026 arXiv (Cornell University) preprint Computer Science Quantum Computing Algorithms and Architecture Open access
Dimitrios Thanos, Caesnan M. G. Leditto, Adam Wesołowski, Andreea-Iulia Lefterovici, Mahtab Yaghubi Rad
0citations