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Isotope Decluttering Reduces Spectral Complexity while Maintaining Protein Structure2026 Analytical Chemistry article Chemistry Mass Spectrometry Techniques and Applications Open access
Sneha Hakke, Willem E. M. Noteborn, Birol Cabukusta, Ye Gao, Kèvin Knoops, Carmen López‐Iglesias, +4 more
0citations -
Gene and protein sequence features augment HLA class I ligand predictions2024 Cell Reports article Biochemistry, Genetics and Molecular Biology vaccines and immunoinformatics approaches Open access
Kaspar Bresser, Benoît P. Nicolet, Anita Jekő, Wei Wu, Fabricio Loayza‐Puch, Reuven Agami, +3 more
4citations -
Protein Engineering by Efficient Sequence Space Exploration Through Combination of Directed Evolution and Computational Design Methodologies2021 Protein Engineering other Biochemistry, Genetics and Molecular Biology Enzyme Catalysis and Immobilization
Subrata Pramanik, Francisca Contreras, Mehdi D. Davari, Ulrich Schwaneberg
13citations -
Podocyte Integrin-β 3 and Activated Protein C Coordinately Restrict RhoA Signaling and Ameliorate Diabetic Nephropathy2020 Journal of the American Society of Nephrology article Medicine Renal Diseases and Glomerulopathies Open access
Thati Madhusudhan, Sanchita Purohit Ghosh, Wei Dong, Dheerendra Gupta, Ahmed Elwakiel, Stoyan Stoyanov, +17 more
27citations -
mRNA Expression Level of ALK in Neuroblastoma Is Associated with Histological Subtype, ALK Mutations and ALK Immunohistochemical Protein Expression2024 Journal of Molecular Pathology article Medicine Neuroblastoma Research and Treatments Open access
Rixt S. Bruinsma, Marta F. Fiocco, Wendy W.J. de Leng, Lennart A. Kester, Karin P.S. Langenberg, Godelieve A.M. Tytgat, +4 more
1citations -
A CRISPR /Cas9‐based multicopy integration system for protein production in Aspergillus niger2023 FEBS Journal article Biochemistry, Genetics and Molecular Biology Fungal and yeast genetics research Open access
Mark Arentshorst, Prajeesh Kooloth-Valappil, László Mózsik, Tonny J. G. Regensburg‐Tuïnk, Sjoerd J. Seekles, Gwen Tjallinks, +3 more
29citations -
Evolutionary Engineering of a Cp*Rh(III) Complex-Linked Artificial Metalloenzyme with a Chimeric β-Barrel Protein Scaffold2023 Journal of the American Chemical Society article Chemistry Cyclopropane Reaction Mechanisms Open access
Shunsuke Kato, Akira Onoda, Ulrich Schwaneberg, Takashi Hayashi
28citations -
Predicting high recombinant protein producer strains of Pichia pastoris MutS using the oxygen transfer rate as an indicator of metabolic burden2022 Scientific Reports article Biochemistry, Genetics and Molecular Biology Fungal and yeast genetics research Open access
David Wollborn, Lara Pauline Munkler, Rebekka Horstmann, Andrea Germer, Lars M. Blank, Jochen Büchs
17citations -
A β-hairpin epitope as novel structural requirement for protein arginine rhamnosylation2020 Chemical Science article Biochemistry, Genetics and Molecular Biology Glycosylation and Glycoproteins Research Open access
Liubov Yakovlieva, Johan Kemmink, Ioli Kotsogianni, Franziska Koller, Jürgen Lassak, Nathaniel I. Martin, +1 more
9citations -
PMIpred: a physics-informed web server for quantitative protein–membrane interaction prediction2024 Bioinformatics article Biochemistry, Genetics and Molecular Biology Machine Learning in Bioinformatics Open access
Niek van Hilten, Nino Verwei, Jeroen Methorst, Carsten Nase, Andrius Bernatavicius, Herre Jelger Risselada
41citations -
PMIpred: A physics-informed web server for quantitative Protein-Membrane Interaction prediction2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Machine Learning in Bioinformatics Open access
Niek van Hilten, Nino Verwei, Jeroen Methorst, Carsten Nase, Andrius Bernatavicius, Herre Jelger Risselada
4citations -
Genolator enables protein function interpretation using a multimodal large language model fusing genomic and structural interpretation with natural language interaction2026 Genome biology article Biochemistry, Genetics and Molecular Biology Machine Learning in Bioinformatics Open access
Martin Danner, Tanhim Islam, Matthias Begemann, Florian Kraft, Miriam Elbracht, Ingo Kurth, +1 more
0citations -
Cell type matching across species using protein embeddings and transfer learning2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Kirti Biharie, Lieke Michielsen, Marcel J. T. Reinders, Ahmed Essam Mahfouz
0citations -
Genolator: A Multimodal Large Language Model Fusing Natural Language, Genomic, and Structural Tokens for Protein Function Interpretation2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Machine Learning in Bioinformatics Open access
Martin Danner, Tanhim Islam, Matthias Begemann, Florian Kraft, Miriam Elbracht, Ingo Kurth, +1 more
0citations -
Modeling the Orthosteric Binding Site of the G Protein-Coupled Odorant Receptor OR5K12023 Journal of Chemical Information and Modeling article Biochemistry, Genetics and Molecular Biology Receptor Mechanisms and Signaling Open access
Alessandro Nicoli, Franziska Haag, Patrick Marcinek, Ruiming He, Johanna Kreißl, Jörg Stein, +5 more
30citations -
Modeling the Orthosteric Binding Site of the G Protein-Coupled Odorant Receptor OR5K12022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Receptor Mechanisms and Signaling Open access
Alessandro Nicoli, Franziska Haag, Patrick Marcinek, Ruiming He, Johanna Kreißl, Jörg Stein, +5 more
2citations -
Localization and discrimination of GG mismatch in duplex DNA by synthetic ligand-enhanced protein nanopore analysis2024 Nucleic Acids Research article Engineering Nanopore and Nanochannel Transport Studies Open access
Wenping Lyu, Jianji Zhu, Xiaoqin Huang, Mauro Chinappi, Denis Garoli, Cenglin Gui, +1 more
6citations -
Accelerated strain construction and characterization of C. glutamicum protein secretion by laboratory automation2022 Applied Microbiology and Biotechnology article Biochemistry, Genetics and Molecular Biology Bacterial Genetics and Biotechnology Open access cited by 1 patent
Carolin Müller, Patrick J. Bakkes, Vera Waffenschmidt, Laura M. Helleckes, Karl‐Erich Jaeger, Wolfgang Wiechert, +3 more
14citations