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De-novoreconstruction and identification of transcriptional gene regulatory network modules differentiating single-cell clusters2023 NAR Genomics and Bioinformatics article Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access
Mhaned Oubounyt, Maria L. Elkjaer, Tanja Laske, Alexander G. B. Grønning, Marcus Johannes Moeller, Jan Baumbach
8citations -
3DDPDs: describing protein dynamics for proteochemometric bioactivity prediction. A case for (mutant) G protein-coupled receptors2023 Journal of Cheminformatics article Computer Science Computational Drug Discovery Methods Open access
Marina Gorostiola González, Remco L. van den Broek, Magdalini Chatzopoulou, Willem Jespers, Adriaan P. IJzerman, Laura H. Heitman, +1 more
6citations -
A comprehensive mouse kidney atlas enables rare cell population characterization and robust marker discovery2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Claudio Novella-Rausell, Magda Grudniewska, Dorien J.M. Peters, Ahmed Essam Mahfouz
5citations -
Memprot.GPCR-ModSim: modelling and simulation of membrane proteins in a nutshell2024 Bioinformatics article Biochemistry, Genetics and Molecular Biology Receptor Mechanisms and Signaling Open access
Remco L. van den Broek, Xabier Bello, Rebecca V Küpper, Gerard J. P. van Westen, Willem Jespers, Hugo Gutiérrez‐de‐Terán
5citations -
Effector–host interactome map links type III secretion systems in healthy gut microbiomes to immune modulation2026 Nature Microbiology article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Veronika Young, Bushra Dohai, Hridi Halder, Jaime Fernandez-Macgregor, Niels S. van Heusden, Thomas C. A. Hitch, +37 more
5citations -
Quantitative modelling of type Ia supernovae spectral time series: constraining the explosion physics2024 Monthly Notices of the Royal Astronomical Society article Physics and Astronomy Gamma-ray bursts and supernovae Open access
M. Magee, Louis Siebenaler, K. Maguire, K. Ackley, Thomas L. Killestein
4citations -
CellSium: versatile cell simulator for microcolony ground truth generation2022 Bioinformatics Advances article Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access
Christian Carsten Sachs, Karina Ruzaeva, Johannes Seiffarth, Wolfgang Wiechert, Benjamin Berkels, Katharina Nöh
3citations -
A Measurement Approach for the Assessment of Indoor Multidomain Comfort: The MULTICLIMACT Experience2025 IEEE International Conference on Metrology for eXtended Reality, Artificial Intelligence and Neural Engineering (MetroXRAINE) conference-paper Engineering Building Energy and Comfort Optimization
Gloria Cosoli, Nibras Abo Alzahab, Dianel Ago, Simone Murazzo, Rania Christoforou, Mina Moayedi, +4 more
3citations -
SCHNEL: Scalable clustering of high dimensional single-cell data2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Tamim Abdelaal, Paul de Raadt, Boudewijn P. F. Lelieveldt, Marcel J. T. Reinders, Ahmed Essam Mahfouz
2citations -
Pressure-Induced Stabilization of 3D Hyperhoneycomb Li 2 (Sn 1– x Ru x )O 32025 Journal of the American Chemical Society article Earth and Planetary Sciences High-pressure geophysics and materials
Kantaro Murayama, Aierxiding Abulikemu, Aurélie Champagne, Francesco Ricci, Prashanth Sivakumar, Jeaniero Ralaitsizafy Andrianjafetra, +8 more
2citations -
Baseline gut microbiota diversity and composition and albendazole efficacy in hookworm-infected individuals2024 Parasites & Vectors article Immunology and Microbiology Parasites and Host Interactions Open access
Javier Gandasegui, Pedro Fleitas, Paula Petrone, Berta Grau-Pujol, Valdemiro Novela, Elisa Rubio-García, +8 more
2citations -
scAGG: Sample-level embedding and classification of Alzheimer's disease from single-nucleus data2025 Computational and Structural Biotechnology Journal article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Timo Verlaan, Gerard A. Bouland, Ahmed Essam Mahfouz, Marcel J. T. Reinders
2citations -
CellSium – Versatile Cell Simulator for Microcolony Ground Truth Generation2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access
Christian Carsten Sachs, Karina Ruzaeva, Johannes Seiffarth, Wolfgang Wiechert, Benjamin Berkels, Katharina Nöh
1citations