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Gut colonisation by extended-spectrum β-lactamase-producing Escherichia coli and its association with the gut microbiome and metabolome in Dutch adults: a matched case-control study2022 The Lancet Microbe article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Quinten R. Ducarmon, Romy Daniëlle Zwittink, Roel P J Willems, Aswin Verhoeven, Sam Nooij, Fiona R.M. van der Klis, +6 more
40citations -
CACTUS: integrating clonal architecture with genomic clustering and transcriptome profiling of single tumor cells2021 Genome Medicine article Biochemistry, Genetics and Molecular Biology Cancer Genomics and Diagnostics Open access
Shadi Darvish Shafighi, Szymon M. Kiełbasa, Julieta Sepúlveda-Yáñez, Ramin Monajemi, Davy Cats, Hailiang Mei, +5 more
10citations -
Cross-species analyses reveal RORγt-expressing dendritic cells are a lineage of antigen presenting cells conserved across tissues2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology Immunotherapy and Immune Responses Open access cited by 3 patents
Hamsa Narasimhan, Maria Lucia Richter, Ramin Shakiba, Nikos E. Papaioannou, Christina Stehle, Isabel Ulmert, +12 more
5citations -
human heart failure atlas2027 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Tore Bleckwehl, David Schumacher, Charlotte Heymanns, Alexander Leunig, Thomas Rathner, Ziche Chen, +22 more
0citations -
Integrated FAIR workflow metadata in BIOMERO2026 Zenodo (CERN European Organization for Nuclear Research) article Computer Science Research Data Management Practices Open access
Joost de Folter, Pascal de Boer, Ben N. G. Giepmans, Ron A. Hoebe, Przemek M. Krawczyk, Torec T. Luik, +5 more
0citations -
Seasonality of composition, genomic potential and activity of coniferous forest soil microbiomes2026 Scientific Data data-paper Environmental Science Microbial Community Ecology and Physiology Open access
Zander Rainier Human, Martina Štursová, Iñaki Odriozola, Tomáš Větrovský, Adina Howe, Diana Navrátilová, +21 more
0citations -
Metabolomic predictors of phenotypic traits can replace and complement measured clinical variables in population-scale expression profiling studies2022 BMC Genomics article Biochemistry, Genetics and Molecular Biology Metabolomics and Mass Spectrometry Studies Open access
Anna Niehues, Daniele Bizzarri, Marcel J. T. Reinders, P. Eline Slagboom, Alain J. van Gool, Erik B. van den Akker, +1 more
3citations -
Hypotaurine Reduces Glucose‐Mediated Vascular Calcification2025 Acta Physiologica article Biochemistry, Genetics and Molecular Biology Aldose Reductase and Taurine Open access
Marina Augusto Heuschkel, Armand M. G. Jaminon, Steffen Gräber, Anna Artati, Jerzy Adamski, Joachim Jankowski, +4 more
5citations -
The Network Zoo: a multilingual package for the inference and analysis of biological networks2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access
Marouen Ben Guebila, Tian Wang, Camila M. Lopes‐Ramos, Viola Fanfani, Deborah A. Weighill, Rebekka Burkholz, +17 more
1citations -
Percolate: An Exponential Family JIVE Model to Design DNA-Based Predictors of Drug Response2023 Lecture notes in computer science conference-paper Biochemistry, Genetics and Molecular Biology Gene expression and cancer classification Open access
Soufiane M. C. Mourragui, Marco Loog, Mirrelijn M. van Nee, Mark A. van de Wiel, Marcel J. T. Reinders, Lodewyk F.A. Wessels
2citations -
Multiomic profiling of medulloblastoma reveals subtype-specific targetable alterations at the proteome and N-glycan level2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Glioma Diagnosis and Treatment Open access
Hannah Voß, Shweta Godbole, Simon Schlumbohm, Yannis Schumann, Martin Mynarek, Stefan Rutkowski, +14 more
1citations -
1H-NMR metabolomics-based surrogates to impute common clinical risk factors and endpoints2021 EBioMedicine article Biochemistry, Genetics and Molecular Biology Metabolomics and Mass Spectrometry Studies Open access
Daniele Bizzarri, Marcel J. T. Reinders, Marian Beekman, P. Eline Slagboom, Bbmri-Nl, Erik B. van den Akker
23citations -
Transcriptomic profiling of epigenetic regulators and metabolic reprogramming in human cholangiocarcinoma2026 Frontiers in Cell and Developmental Biology article Medicine Cholangiocarcinoma and Gallbladder Cancer Studies Open access
Amaya López-Pascual, Jasmin Elurbide, Emiliana Valbuena-Goiricelaya, Maria Ujue Latasa, Elena Adán-Villaescusa, Borja Castelló-Uribe, +16 more
1citations -
Genomics Research of Lifetime Depression in the Netherlands: The BIObanks Netherlands Internet Collaboration (BIONIC) Project2024 Twin Research and Human Genetics article Biochemistry, Genetics and Molecular Biology Genetic Associations and Epidemiology Open access
Floris Huider, Yuri Milaneschi, Jouke‐Jan Hottenga, Mariska Bot, M. Liset Rietman, Almar A. L. Kok, +18 more
5citations -
Personalized whole‐body models integrate metabolism, physiology, and the gut microbiome2020 Molecular Systems Biology article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access cited by 4 patents
Ines Thiele, Swagatika Sahoo, Almut Heinken, Johannes Hertel, Laurent Heirendt, Maike Kathrin Aurich, +1 more
218citations -
Reference materials for MS-based untargeted metabolomics and lipidomics: a review by the metabolomics quality assurance and quality control consortium (mQACC)2022 Metabolomics article Biochemistry, Genetics and Molecular Biology Metabolomics and Mass Spectrometry Studies Open access cited by 2 patents
Katrice A. Lippa, Juan J. Aristizabal‐Henao, Richard D. Beger, John A. Bowden, Corey D. Broeckling, Chris Beecher, +20 more
140citations -
Context-dependent molecular responses to heterogeneous metabolic disease traits2026 medRxiv preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Theodora-Dafni Michalettou, Sapna Sharma, Natalie N. Atabaki, Juan J. Fernandez-Tajes, Mun‐Gwan Hong, Jonathan Adam, +34 more
0citations