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GraphHDBSCAN*: Graph-based Hierarchical Clustering on High Dimensional Single-cell RNA Sequencing Data2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Seyed Ardalan Ghoreishi, Aleksandra Szmigiel, James Shiniti Nagai, Ivan G. Costa, Arthur Zimek, Ricardo J. G. B. Campello
1citations -
scACCorDiON: a clustering approach for explainable patient level cell–cell communication graph analysis2025 Bioinformatics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
James Shiniti Nagai, Tiago Maié, Michael T. Schaub, Ivan G. Costa
3citations -
On the benchmarking of clustering algorithms and hyperparameter influence for cell type detection in single-cell RNA sequencing data2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Aleksandra Szmigiel, Ivan G. Costa, Ricardo J. G. B. Campello
2citations -
SCHNEL: scalable clustering of high dimensional single-cell data2020 Bioinformatics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Tamim Abdelaal, Paul de Raadt, Boudewijn P. F. Lelieveldt, Marcel J. T. Reinders, Ahmed Essam Mahfouz
9citations -
SCHNEL: Scalable clustering of high dimensional single-cell data2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Tamim Abdelaal, Paul de Raadt, Boudewijn P. F. Lelieveldt, Marcel J. T. Reinders, Ahmed Essam Mahfouz
2citations -
LoGCC: Local-to-Global Correlation Clustering for Scalar Field Ensembles2025 IEEE Transactions on Visualization and Computer Graphics article Computer Science Data Visualization and Analytics Open access
Nicolas F. Chaves-de-Plaza, Renata G. Raidou, Prerak Mody, Marius Staring, René van Egmond, Anna Vilanova, +1 more
0citations -
Graph theory for the analysis of micro-electrode array recordings of human brain slices – framework and benchmarking2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Functional Brain Connectivity Studies Open access
Jonas Ort, Victoria Sofie Witzig, Aniella Bak, Jan Heckelmann, Ann-Kathrin Roeb, Hussam Hamou, +5 more
0citations -
Explainable LiDAR 3D Point Cloud Segmentation and Clustering for Detecting Airplane-Generated Wind Turbulence2025 ACM SIGKDD Conference on Knowledge Discovery and Data Mining (KDD) conference-paper Computer Science Advanced Neural Network Applications Open access
Zhan Qu, Shuzhou Yuan, Michael Färber, Marius Brennfleck, Niklas Wartha, Anton Stephan
1citations -
GEval: A Modular and Extensible Evaluation Framework for Graph Embedding Techniques2020 Lecture notes in computer science conference-paper Computer Science Advanced Graph Neural Networks Open access
Maria Angela Pellegrino, Abdulrahman Altabba, Martina Garofalo, Petar Ristoski, Michael Cochez
19citations -
Cluster extent inference revisited: quantification and localisation of brain activity2023 Journal of the Royal Statistical Society Series B (Statistical Methodology) article Neuroscience Functional Brain Connectivity Studies Open access
Jelle J. Goeman, Paweł Górecki, Ramin Monajemi, Xu Chen, Thomas E. Nichols, Wouter D. Weeda
7citations -
Clustering identifies endotypes of traumatic brain injury in an intensive care cohort: a CENTER-TBI study2022 Critical Care article Medicine Traumatic Brain Injury and Neurovascular Disturbances Open access cited by 1 patent
Cecilia A. I. Åkerlund, Nino Stocchetti, Ewout Willem Steyerberg, David K. Menon, Ari Ercole, David Nelson, +88 more
90citations -
Atlas-scale spatially aware clustering with support for 3D and multimodal data using SpatialLeiden2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Niklas Müller‐Bötticher, Alexander Malt, Paul Kießling, Roland Eils, Christoph Kuppe, Naveed Ishaque
0citations -
Graph‐based algorithms to dissect long‐distance water‐mediated H‐bond networks for conformational couplings in GPCRs2024 British Journal of Pharmacology article Biochemistry, Genetics and Molecular Biology Receptor Mechanisms and Signaling Open access
Éva Bertalan, Matthew J. Rodrigues, Gebhard F. X. Schertler, Ana‐Nicoleta Bondar
14citations -
Graph-based feature extraction on object-centric event logs2023 International Journal of Data Science and Analytics article Business, Management and Accounting Business Process Modeling and Analysis Open access
Alessandro Berti, Johannes Günter Herforth, Mahnaz Sadat Qafari, Wil M. P. van der Aalst
15citations -
PlantMetWiki: a FAIR knowledge graph for plant metabolic pathway cross-species representation and integration2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Elena Del Pup, M Muller, Marvin Martens, Egon Willighagen, Marnix H. Medema, Denise Slenter, +1 more
0citations