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Chemoenzymatic labeling of DNA methylation patterns for single-molecule epigenetic mapping2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access
Tslil Gabrieli, Yael Michaeli, Sigal Avraham, Dmitry Torchinsky, Matyas Juhasz, Ceyda Çoruh, +5 more
7citations -
Chemoenzymatic labeling of DNA methylation patterns for single-molecule epigenetic mapping2022 Nucleic Acids Research article Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access
Tslil Gabrieli, Yael Michaeli, Sigal Avraham, Dmitry Torchinsky, Sapir Margalit, Leonie Schütz, +7 more
33citations -
Unsupervised protein embeddings outperform hand-crafted sequence and structure features at predicting molecular function2020 Bioinformatics article Biochemistry, Genetics and Molecular Biology Machine Learning in Bioinformatics Open access cited by 2 patents
Amelia Villegas-Morcillo, Stavros Makrodimitris, Roeland C. H. J. van Ham, Angel Manuel Gomez, Marcel J. T. Reinders
137citations -
Monitoring Anthracycline Cancer Drug‐Nucleosome Interaction by NMR Using a Specific Isotope Labeling Approach for Nucleosomal DNA2024 ChemBioChem article Biochemistry, Genetics and Molecular Biology DNA and Nucleic Acid Chemistry Open access
Clara L. van Emmerik, Vincenzo R. Lobbia, Jacques Neefjes, Frank H. T. Nelissen, Hugo van Ingen
3citations -
Label-free single-cell RNA multiplexing leveraging genetic variability2024 Nature Communications article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Konrad Hoeft, Tore Bleckwehl, David Schumacher, Hyojin Kim, Robert Meyer, Ling Zhang, +7 more
3citations -
Fast and efficient generation of knock-in human organoids using homology-independent CRISPR/Cas9 precision genome editing2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology CRISPR and Genetic Engineering Open access cited by 15 patents
Benedetta Artegiani, Delilah F. G. Hendriks, Joep Beumer, Rutger N.U. Kok, Xuan Zheng, Indi P. Joore, +4 more
29citations -
High light induces species specific changes in the membrane lipid composition of Chlorella2020 Biochemical Journal article Biochemistry, Genetics and Molecular Biology Lipid metabolism and biosynthesis Open access
Janka Widzgowski, Alexander Vogel, Lena Altrogge, Julia Pfaff, Heiko Schoof, Björn Usadel, +3 more
28citations -
Cell type matching across species using protein embeddings and transfer learning2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Kirti Biharie, Lieke Michielsen, Marcel J. T. Reinders, Ahmed Essam Mahfouz
0citations -
scDecorr - Feature decorrelation representation learning with domain adaptation enables self-supervised alignment of multiple single-cell experiments0citations
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scDecorr: feature decorrelation based representation learning enables self-supervised alignment of multiple single-cell experiments2026 Scientific Reports article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Ritabrata Sanyal, Yang Xu, Hyojin Kim, Rafael Kramann, Sikander Hayat
0citations -
WALDO: community-Wide Annotation of γδ Lymphocytes in single-cell Data, Openly benchmarked2026 Zenodo (CERN European Organization for Nuclear Research) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Farid Keramati, Moosa Rezwani, Likai Tan, David Hamilton, Zheng Song, Tao Yang, +10 more
0citations -
A hybrid model combining evolutionary probability and machine learning leverages data-driven protein engineering2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics Open access
Alexander-Maurice Illig, Niklas E. Siedhoff, Ulrich Schwaneberg, Mehdi D. Davari
11citations -
Integrating Whole-Genome Sequencing in Clinical Genetics: A Novel Disruptive Structural Rearrangement Identified in the Dystrophin Gene (DMD)2021 International Journal of Molecular Sciences article Biochemistry, Genetics and Molecular Biology Genomics and Rare Diseases Open access
Ana Gonçalves, Ana María Fortuna, Yavuz Ariyürek, Márcia E. Oliveira, Goreti Nadais, Jorge Pinheiro, +4 more
12citations -
Anaerobic single‐cell dispensing facilitates the cultivation of human gut bacteria2022 Environmental Microbiology article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Afrizal Afrizal, Thomas C. A. Hitch, Alina Viehof, Nicole Simone Treichel, Birte Abt, Eva Miriam Buhl, +3 more
61citations -
Evolutionary Probability and Stacked Regressions Enable Data-Driven Protein Engineering with Minimized Experimental Effort2024 Journal of Chemical Information and Modeling article Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics
Alexander-Maurice Illig, Niklas E. Siedhoff, Mehdi D. Davari, Ulrich Schwaneberg
3citations -
Phase 1 clinical trial of losmapimod in facioscapulohumeral dystrophy: Safety, tolerability, pharmacokinetics, and target engagement2021 British Journal of Clinical Pharmacology article Biochemistry, Genetics and Molecular Biology Muscle Physiology and Disorders cited by 3 patents
Michelle L. Mellion, Lucienne V. Ronco, Cécile L. Berends, Lisa Pagan, Sander Brooks, Michiel Joost van Esdonk, +10 more
41citations -
STAPLER: Efficient learning of TCR-peptide specificity prediction from full-length TCR-peptide data2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology vaccines and immunoinformatics approaches Open access cited by 1 patent
Bjørn P. Y. Kwee, Marius Messemaker, Eric Marcus, Giacomo Oliveira, Wouter Scheper, Catherine J. Wu, +2 more
41citations -
Tumor Necrosis Factor Receptor SF10A (TNFRSF10A) SNPs Correlate With Corticosteroid Response in Duchenne Muscular Dystrophy2020 Frontiers in Genetics article Biochemistry, Genetics and Molecular Biology Muscle Physiology and Disorders Open access
Chiara Passarelli, Rita Selvatici, Alberto Carrieri, Francesca Romana Di Raimo, Maria Sofia Falzarano, F. Fortunato, +28 more
15citations -
DNA introduces an independent temperature responsiveness to thermosensitive microgels and enables switchable plasmon coupling as well as controlled uptake and release2020 Nanoscale article Biochemistry, Genetics and Molecular Biology Hydrogels: synthesis, properties, applications
Sabine Eisold, Laura Hoppe Alvarez, Ke Ran, Rebecca Hengsbach, Gerhard Fink, Silvia Centeno Benigno, +3 more
7citations