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cgNA+web : A Visual Interface to the cgNA+ Sequence-dependent Statistical Mechanics Model of Double-stranded Nucleic Acids2023 Journal of Molecular Biology article Biochemistry, Genetics and Molecular Biology DNA and Nucleic Acid Chemistry Open access
Rahul Sharma, Alessandro S. Patelli, Lennart de Bruin, John H. Maddocks
28citations -
Comparison of Illumina versus Nanopore 16S rRNA Gene Sequencing of the Human Nasal Microbiota2020 Genes article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access cited by 1 patent
Astrid P. Heikema, Deborah Horst-Kreft, Stefan A. Boers, Rick Jansen, Saskia Hiltemann, Willem de Koning, +6 more
127citations -
Comparison of Illumina Versus Nanopore 16S rRNA Gene Sequencing of the Human Nasal Microbiota2020 Preprints.org preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Astrid P. Heikema, Deborah Horst-Kreft, Stefan A. Boers, Rick Jansen, Saskia Hiltemann, Willem de Koning, +6 more
28citations -
Taxonomic classification and abundance estimation using 16S and WGS—A comparison using controlled reference samples2020 Forensic Science International Genetics article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Lusine Khachatryan, Rick H. de Leeuw, Margriet E. M. Kraakman, Nikolaos Pappas, Marije te Raa, Hailiang Mei, +2 more
52citations -
Comparison of the performance of two targeted metagenomic virus capture probe-based methods using reference control materials and clinical samples2024 Journal of Clinical Microbiology article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Kees Mourik, Igor A. Sidorov, Ellen C. Carbo, David van der Meer, Arnoud Boot, Aloys C.M. Kroes, +3 more
29citations -
Comparison of the performance of two targeted metagenomic virus capture probe-based methods using synthetic viral sequences and clinical samples2023 medRxiv preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Kees Mourik, Igor A. Sidorov, Ellen C. Carbo, David van der Meer, Arnoud Boot, Aloys C.M. Kroes, +3 more
4citations -
Linkage Mapping vs. Association: A Comparison of Two RADseq ‐Based Approaches to Identify Markers for Homomorphic Sex Chromosomes in Large Genomes2025 Molecular Ecology Resources article Biochemistry, Genetics and Molecular Biology Genetic and Clinical Aspects of Sex Determination and Chromosomal Abnormalities Open access
James France, Wiesław Babik, Katarzyna Dudek, Marzena Marszałek, Ben Wielstra
3citations -
Linkage mapping vs Association: A comparison of two RADseq-based approaches to identify markers for homomorphic sex chromosomes in large genomes.2024 preprint Biochemistry, Genetics and Molecular Biology Genetic and Clinical Aspects of Sex Determination and Chromosomal Abnormalities Open access
James France, Wiesław Babik, Katarzyna Dudek, Marzena Marszałek, Ben Wielstra
2citations -
Comparison of 16S ribosomal RNA hypervariable regions in microbiome studies of anorexia nervosa2025 Frontiers in Microbiology article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Arunabh Sharma, Nadia Andrea Andreani, Lara Keller, Beate Herpertz‐Dahlmann, Jochen Seitz, John F. Baines, +1 more
0citations -
Toward Standards in Clinical Microbiota Studies: Comparison of Three DNA Extraction Methods and Two Bioinformatic Pipelines2020 mSystems article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Quinten R. Ducarmon, Bastian Volker Helmut Hornung, Anoecim Robecca Geelen, Eduard J. Kuijper, Romy Daniëlle Zwittink
68citations -
Comparison and benchmark of structural variants detected from long read and long-read assembly2023 Briefings in Bioinformatics article Biochemistry, Genetics and Molecular Biology Genomic variations and chromosomal abnormalities Open access
Jiadong Lin, Peng Jia, Songbo Wang, Walter A. Kosters, Kai Ye
15citations -
Comparison and benchmark of structural variants detected from long read and long read assembly2023 Zenodo (CERN European Organization for Nuclear Research) article Biochemistry, Genetics and Molecular Biology Genomic variations and chromosomal abnormalities Open access
Jiadong Lin, Peng Jia, Songbo Wang, Walter A. Kosters, Kai Ye
1citations -
Effect of Prooxidative Natural Products: Comparison of the OSI1 (YKL071w) Promoter Luciferase Construct from Yeast with an Nrf2/Keap Reporter System2020 Applied Sciences article Biochemistry, Genetics and Molecular Biology Genomics, phytochemicals, and oxidative stress Open access
Ivan Schlembach, Andreas Uebachs, Tim Caspers, Athanassios Fragoulis, Alan John Slusarenko, Martin C. H. Gruhlke
1citations -
Handling of spurious sequences affects the outcome of high-throughput 16S rRNA gene amplicon profiling2021 ISME Communications article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Sandra Reitmeier, Thomas C. A. Hitch, Nicole Simone Treichel, Nikolaos Fikas, Bela Hausmann, Amanda E. Ramer‐Tait, +5 more
181citations -
Performance of five metagenomic classifiers for virus pathogen detection using respiratory samples from a clinical cohort2022 medRxiv preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Ellen C. Carbo, Igor A. Sidorov, Anneloes L. van Rijn-Klink, Sander van Boheemen, Hailiang Mei, Pieter Sicco Hiemstra, +4 more
4citations -
Improved Diagnostics in Bacterial Neonatal Meningitis Using a Next-Generation Sequencing Platform2023 Infectious Diseases and Therapy article Biochemistry, Genetics and Molecular Biology Bacterial Identification and Susceptibility Testing Open access
Alieke van der Hoeven, Martha T. van der Beek, Vincent Bekker, Erin Meijers, Marco J. R. Ivens, Els Wessels, +2 more
8citations -
Ten numbers from the Laplace–Beltrami spectrum facilitate training-free classification of protein structures based on surface shape2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics Open access
Miriam Fernández-Giro Muñoz, Jessica Emonts, Benjamin Berkels, Johannes F. Buyel
0citations -
Robust detection of translocations in lymphoma FFPE samples using targeted locus capture-based sequencing2021 Nature Communications article Biochemistry, Genetics and Molecular Biology Genomic variations and chromosomal abnormalities Open access
Amin Allahyar, Mark Pieterse, Joost F. Swennenhuis, G. Tjitske Los-de Vries, Roos J. Leguit, Ruud W. J. Meijers, +22 more
44citations -
Comparative analysis of mouse and human preimplantation development following POU5F1 CRISPR/Cas9 targeting reveals interspecies differences2021 Human Reproduction article Biochemistry, Genetics and Molecular Biology Pluripotent Stem Cells Research Open access
Panagiotis Stamatiadis, Annekatrien Boel, Gwenny Cosemans, Mina Popovic, Bieke Bekaert, Ramesh Reddy Guggilla, +8 more
21citations -
Integrative Learning of Disentangled Representations from Single-Cell RNA-Sequencing Datasets2026 Computational and Structural Biotechnology Journal article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Claudio Novella-Rausell, Dorien J.M. Peters, Ahmed Essam Mahfouz
1citations -
Integrative learning of disentangled representations from single-cell RNA-sequencing datasets2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Claudio Novella-Rausell, Dorien J.M. Peters, Ahmed Essam Mahfouz
0citations -
Large-scale targeted sequencing identifies risk genes for neurodevelopmental disorders2020 Nature Communications article Biochemistry, Genetics and Molecular Biology Genetics and Neurodevelopmental Disorders Open access
Tianyun Wang, Kendra Hoekzema, Davide Vecchio, Huidan Wu, Arvis Sulovari, Bradley P. Coe, +86 more
223citations