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Seed longevity is controlled by metacaspases

Nature Communications, vol. 15, pp. 6748

Abstract

To survive extreme desiccation, seeds enter a period of quiescence that can last millennia. Seed quiescence involves the accumulation of protective storage proteins and lipids through unknown adjustments in protein homeostasis (proteostasis). Here, we show that mutation of all six type-II metacaspase (MCA-II) proteases in Arabidopsis thaliana disturbs proteostasis in seeds. MCA-II mutant seeds fail to restrict the AAA ATPase CELL DIVISION CYCLE 48 (CDC48) at the endoplasmic reticulum to discard misfolded proteins, compromising seed storability. Endoplasmic reticulum (ER) localization of CDC48 relies on the MCA-IIs-dependent cleavage of PUX10 (ubiquitination regulatory X domain-containing 10), the adaptor protein responsible for titrating CDC48 to lipid droplets. PUX10 cleavage enables the shuttling of CDC48 between lipid droplets and the ER, providing an important regulatory mechanism sustaining spatiotemporal proteolysis, lipid droplet dynamics, and protein homeostasis. In turn, the removal of the PUX10 adaptor in MCA-II mutant seeds partially restores proteostasis, CDC48 localization, and lipid droplet dynamics prolonging seed lifespan. Taken together, we uncover a proteolytic module conferring seed longevity.

Authors 19

  1. University of Crete · Sun Yat-sen University · Swedish University of Agricultural Sciences · Foundation for Research and Technology Hellas

    Affiliation as printed

    Department of Biology, University of Crete, 71500, Heraklion, Greece

    Department of Plant Biology, Uppsala BioCenter, Swedish University of Agricultural Sciences and Linnean Center for Plant Biology, 75007, Uppsala, Sweden

    Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology-Hellas, 71500, Heraklion, Greece

    State Key Laboratory of Biocontrol, Guangdong Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-Sen University, 510275, Guangzhou, China

    State Key Laboratory of Biocontrol, Guangdong Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat–Sen University, 510275, Guangzhou, China

  2. University of Crete · Foundation for Research and Technology Hellas

    Affiliation as printed

    Department of Biology, University of Crete, 71500, Heraklion, Greece

    Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology-Hellas, 71500, Heraklion, Greece

  3. University of Potsdam · HMU Health and Medical University

    Affiliation as printed

    Department of Medicine, Health and Medical University, 14471, Potsdam, Germany

  4. Uppsala University

    Affiliation as printed

    Plant Ecology and Evolution, Department of Ecology and Genetics, Evolutionary Biology Centre and the Linnean Centre for Plant Biology in Uppsala, Uppsala University, 75236, Uppsala, Sweden

  5. Swedish University of Agricultural Sciences

    Affiliation as printed

    Department of Molecular Sciences, Uppsala BioCenter, Swedish University of Agricultural Sciences and Linnean Center for Plant Biology, 75007, Uppsala, Sweden

  6. Swedish University of Agricultural Sciences

    Affiliation as printed

    Department of Molecular Sciences, Uppsala BioCenter, Swedish University of Agricultural Sciences and Linnean Center for Plant Biology, 75007, Uppsala, Sweden

  7. Swedish University of Agricultural Sciences · Ghent University · VIB-UGent Center for Plant Systems Biology

    Affiliation as printed

    Department of Molecular Sciences, Uppsala BioCenter, Swedish University of Agricultural Sciences and Linnean Center for Plant Biology, 75007, Uppsala, Sweden

    Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052, Ghent, Belgium

    VIB-Ugent Center for Plant Systems Biology, Technologiepark 71, 9052, Ghent, Belgium

  8. Consejo Superior de Investigaciones Científicas · Instituto de Bioquímica Vegetal y Fotosíntesis · Universidad de Sevilla

    Affiliation as printed

    Departamento de Bioquımica Vegetal y Biologıa Molecular, Facultad de Biologıa, Universidad de Sevilla, 41012, Sevilla, Spain

    Instituto de Bioquımica Vegetal y Fotosıntesis, Consejo Superior de Investigaciones Cientıficas (CSIC)–Universidad de Sevilla, 41092, Sevilla, Spain

  9. Ghent University · VIB-UGent Center for Plant Systems Biology

    Affiliation as printed

    Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052, Ghent, Belgium

    VIB-Ugent Center for Plant Systems Biology, Technologiepark 71, 9052, Ghent, Belgium

    VIB–Ugent Center for Plant Systems Biology, Technologiepark 71, 9052, Ghent, Belgium

  10. University of Bonn

    Affiliation as printed

    University of Bonn, Institute of Molecular Physiology and Biotechnology of Plants (IMBIO), Karlrobert Kreiten Straße 13, 53115, Bonn, Germany

  11. AgroParisTech · Université Paris-Saclay · Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement · Institut Jean-Pierre Bourgin

    Affiliation as printed

    Université Paris–Saclay, INRAE, AgroParisTech, Institut Jean–Pierre Bourgin (IJPB), 78000, Versailles, France

  12. Ghent University · VIB-UGent Center for Medical Biotechnology

    Affiliation as printed

    Department of Biomolecular Medicine, Ghent University, Technologiepark-Zwijnaarde 75, B9052, Ghent, Belgium

    VIB Center for Medical Biotechnology, Technologiepark-Zwijnaarde 75, B9052, Ghent, Belgium

  13. Consejo Superior de Investigaciones Científicas · Instituto de Bioquímica Vegetal y Fotosíntesis · Universidad de Sevilla

    Affiliation as printed

    Instituto de Bioquımica Vegetal y Fotosıntesis, Consejo Superior de Investigaciones Cientıficas (CSIC)–Universidad de Sevilla, 41092, Sevilla, Spain

  14. Leiden University

    Affiliation as printed

    Institute of Biology Leiden, Leiden University, 2333 BE, Leiden, The Netherlands

  15. Ghent University · VIB-UGent Center for Plant Systems Biology

    Affiliation as printed

    Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052, Ghent, Belgium

    VIB-Ugent Center for Plant Systems Biology, Technologiepark 71, 9052, Ghent, Belgium

    VIB–Ugent Center for Plant Systems Biology, Technologiepark 71, 9052, Ghent, Belgium

  16. Ghent University · VIB-UGent Center for Plant Systems Biology

    Affiliation as printed

    Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052, Ghent, Belgium

    VIB-Ugent Center for Plant Systems Biology, Technologiepark 71, 9052, Ghent, Belgium

    VIB–Ugent Center for Plant Systems Biology, Technologiepark 71, 9052, Ghent, Belgium

  17. University of East Anglia · Sainsbury Laboratory

    Affiliation as printed

    The Sainsbury Laboratory, University of East Anglia, Colney Lane, NR47UH, Norwich, UK

  18. Swedish University of Agricultural Sciences

    Affiliation as printed

    Department of Molecular Sciences, Uppsala BioCenter, Swedish University of Agricultural Sciences and Linnean Center for Plant Biology, 75007, Uppsala, Sweden

  19. Panagiotis N. Moschou corresponding

    University of Crete · Swedish University of Agricultural Sciences · FORTH Institute of Molecular Biology and Biotechnology · Foundation for Research and Technology Hellas

    Affiliation as printed

    Department of Biology, University of Crete, 71500, Heraklion, Greece. Panagiotis.moschou@uoc.gr

    Department of Molecular Sciences, Uppsala BioCenter, Swedish University of Agricultural Sciences and Linnean Center for Plant Biology, 75007, Uppsala, Sweden. Panagiotis.moschou@uoc.gr

    Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology-Hellas, 71500, Heraklion, Greece. Panagiotis.moschou@uoc.gr

    Department of Molecular Sciences, Uppsala BioCenter, Swedish University of Agricultural Sciences and Linnean Center for Plant Biology, 75007, Uppsala, Sweden

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References 59