The Reactome Pathway Knowledgebase

• Butyrate-producing gut bacterium Faecalibacterium prausnitzii protects against bacterial pneumonia

  2025 European Respiratory Journal article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access

  19

  citations
• A Combined Lifestyle Intervention Induces a Sensitization of the Blood Transcriptomic Response to a Nutrient Challenge

  2024 article Biochemistry, Genetics and Molecular Biology Nutrition, Genetics, and Disease Open access

  1

  citations
• Krüppel-like factor 7 influences translation and pathways involved in ribosomal biogenesis in breast cancer

  2022 Breast Cancer Research article Biochemistry, Genetics and Molecular Biology Kruppel-like factors research Open access

  17

  citations
• Transcription and splicing regulation by NLRC5 shape the interferon response in human pancreatic β cells

  2022 Science Advances article Biochemistry, Genetics and Molecular Biology Diabetes and associated disorders Open access

  39

  citations
• Comparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq data

  2022 Nature Communications article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access cited by 1 patent

  670

  citations
• The RD‐Connect Genome‐Phenome Analysis Platform: Accelerating diagnosis, research, and gene discovery for rare diseases

  2022 Human Mutation article Biochemistry, Genetics and Molecular Biology Genomics and Rare Diseases Open access

  60

  citations
• Proteomic Analysis Identifies FNDC1, A1BG, and Antigen Processing Proteins Associated with Tumor Heterogeneity and Malignancy in a Canine Model of Breast Cancer

  2021 Cancers article Medicine Veterinary Oncology Research Open access

  26

  citations
• Patient-specific Boolean models of signaling networks guide personalized treatments

  2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access

  4

  citations
• Contextualization of causal regulatory networks from toxicogenomics data applied to drug-induced liver injury

  2021 Toxicology Letters article Pharmacology, Toxicology and Pharmaceutics Drug-Induced Hepatotoxicity and Protection Open access

  4

  citations
• Cell-cell Communication Inference from Single-cell RNA-Seq Data: a Comparison of Methods and Resources

  2021 Research Square preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  3

  citations
• New insights into the mechanisms underlying 5-fluorouracil-induced intestinal toxicity based on transcriptomic and metabolomic responses in human intestinal organoids

  2021 Archives of Toxicology article Medicine Colorectal Cancer Treatments and Studies Open access

  57

  citations
• Comparison of Resources and Methods to infer Cell-Cell Communication from Single-cell RNA Data

  2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  23

  citations
• A combined lifestyle intervention induces a sensitization of the blood transcriptomic response to a nutrient challenge

  2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Nutrition, Genetics, and Disease Open access

  5

  citations
• Potential impact of celiac disease genetic risk factors on T cell receptor signaling in gluten-specific CD4+ T cells

  2021 Scientific Reports article Medicine Celiac Disease Research and Management Open access

  12

  citations
• Contextualization of causal regulatory networks from toxicogenomics data applied to drug-induced liver injury

  2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Pharmacology, Toxicology and Pharmaceutics Drug-Induced Hepatotoxicity and Protection Open access

  0

  citations
• A strategy to incorporate prior knowledge into correlation network cutoff selection

  2020 Nature Communications article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access

  29

  citations
• Tumor Cell Attack by Crotalicidin (Ctn) and Its Fragment Ctn[15–34]: Insights into Their Dual Membranolytic and Intracellular Targeting Mechanism

  2020 ACS Chemical Biology article Immunology and Microbiology Antimicrobial Peptides and Activities

  15

  citations
• Drug sensitivity prediction with normal inverse Gaussian shrinkage informed by external data

  2020 Biometrical Journal article Biochemistry, Genetics and Molecular Biology Gene expression and cancer classification Open access

  4

  citations
• The Minimum Information about a Molecular Interaction CAusal STatement (MI2CAST)

  2020 Bioinformatics article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access

  23

  citations
• Frameshift mutations at the C-terminus of HIST1H1E result in a specific DNA hypomethylation signature

  2020 Clinical Epigenetics article Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access

  61

  citations

20 results