BRENDA, the ELIXIR core data resource in 2021: new developments and updates

• AdventML: Advanced Enzyme Temperature Prediction with Transformer-Based Embeddings and Resampling Strategies

  2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Machine Learning in Bioinformatics Open access

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• MITE: the Minimum Information about a Tailoring Enzyme database for capturing specialized metabolite biosynthesis

  2025 Nucleic Acids Research article Medicine Microbial Natural Products and Biosynthesis Open access

  11

  citations
• MxlPy - Python Package for Mechanistic Learning in Life Science

  2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science Explainable Artificial Intelligence (XAI) Open access

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• Cytosolic fructose - an underestimated player in the regulation of sucrose biosynthesis

  2025 BMC Plant Biology article Agricultural and Biological Sciences Plant nutrient uptake and metabolism Open access

  5

  citations
• MxlPy—Python package for mechanistic learning and hybrid modelling in life science

  2024 Bioinformatics Advances software-paper Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access

  1

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• Cytosolic fructose - an underestimated player in the regulation of the sucrose biosynthesis?

  2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Plant nutrient uptake and metabolism Open access

  0

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• The Minimum Information about a Tailoring Enzyme/Maturase data standard for capturing natural product biosynthesis

  2024 ChemRxiv preprint Medicine Microbial Natural Products and Biosynthesis Open access

  6

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• Production of enzymes for the removal of odorous substances in plant biomass

  2023 Protein Expression and Purification article Biochemistry, Genetics and Molecular Biology Transgenic Plants and Applications Open access

  3

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• Enzyme cascades for the synthesis of nucleotide sugars: Updates to recent production strategies

  2022 Carbohydrate Research article Chemistry Carbohydrate Chemistry and Synthesis cited by 2 patents

  41

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• Systems Biology in ELIXIR: modelling in the spotlight

  2022 F1000Research article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access

  10

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• Deubiquitinating enzymes and the proteasome regulate preferential sets of ubiquitin substrates

  2022 Nature Communications article Biochemistry, Genetics and Molecular Biology Ubiquitin and proteasome pathways Open access

  96

  citations

11 results