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Geomstats: A Python Package for Riemannian Geometry in Machine Learning
2020 arXiv (Cornell University) software-paper Mathematics Morphological variations and asymmetry Open access

Nina Miolane, Johan Mathe, Benjamin Hou, Nicolas Guigui, Yann Thanwerdas, Stefan Heyder, +12 more

95

citations
bletl ‐ A Python package for integrating BioLector microcultivation devices in the Design‐Build‐Test‐Learn cycle
2022 Engineering in Life Sciences software-paper Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access

Michael Osthege, Niklas Tenhaef, Rebecca Zyla, Carolin Müller, Johannes Hemmerich, Wolfgang Wiechert, +2 more

42

citations
SHEMAT-Suite: An open-source code for simulating flow, heat and species transport in porous media
2020 SoftwareX software-paper Engineering Reservoir Engineering and Simulation Methods Open access

Johannes Keller, Volker Rath, Johanna Bruckmann, Darius Mottaghy, Christoph Clauser, Andreas M. Wolf, +3 more

21

citations
imea: A Python package for extracting 2D and 3D shape measurements from images
2021 The Journal of Open Source Software software-paper Computer Science Medical Image Segmentation Techniques Open access

Nils Kroell

18

citations
ASSUME: An agent-based simulation framework for exploring electricity market dynamics with reinforcement learning
2025 SoftwareX software-paper Engineering Electric Power System Optimization Open access

Nick Harder, Kim K. Miskiw, Manish Khanra, Florian Maurer, Ramiz Qussous, Christof Weinhardt, +3 more

13

citations
OptiMic: A tool to generate optimized polycrystalline microstructures for materials simulations
2021 SoftwareX software-paper Materials Science Microstructure and mechanical properties Open access

Prince Henry Serrao, Stefan Sandfeld, Aruna Prakash

12

citations
ObiWan-Microbi: OMERO-based integrated workflow for annotating microbes in the cloud
2024 SoftwareX software-paper Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access

Johannes Seiffarth, Tim Scherr, Bastian Wollenhaupt, Oliver Neumann, Hanno Scharr, Dietrich Kohlheyer, +2 more

11

citations
pycity_scheduling—A Python framework for the development and assessment of optimisation-based power scheduling algorithms for multi-energy systems in city districts
2021 SoftwareX software-paper Engineering Integrated Energy Systems Optimization Open access

Sebastian Schwarz, Sebastian Alexander Uerlich, Antonello Monti

11

citations
ORTiS solver codegen: C++ code generation tools for high performance, FPGA-based, real-time simulation of power electronic systems
2021 SoftwareX software-paper Engineering Real-time simulation and control systems Open access

Matthew Milton, Andrea Benigni

6

citations
ENTIRETY — sEmanNTIc pRovisioning and govErning ioT devices in smart energY domain
2022 SoftwareX software-paper Computer Science IoT and Edge/Fog Computing Open access

Maliheh Haghgoo, Ilya Sychev, Antonello Monti, Frank H. P. Fitzek

6

citations
Noisecut: a python package for noise-tolerant classification of binary data using prior knowledge integration and max-cut solutions
2024 BMC Bioinformatics software-paper Computer Science Machine Learning and Data Classification Open access

Moein E. Samadi, Hedieh Mirzaieazar, Alexander Mitsos, Andreas Schuppert

5

citations
ProdSim: An Open-source Python Package for Generating High-resolution Synthetic Manufacturing Data on Product, Machine and Shop-Floor Levels
2022 Procedia CIRP software-paper Engineering Manufacturing Process and Optimization Open access

Chrismarie Enslin, Владимир Самсонов, Daniel Lütticke, Robert Heinrich Schmitt

5

citations
Open-source skull reconstruction with MONAI
2023 SoftwareX software-paper Medicine Artificial Intelligence in Healthcare and Education Open access

Jianning Li, Behrus Puladi, Victor Alves, Michael Kamp, Moon Kim, Felix Nensa, +3 more

4

citations
Development of a holistic Python package for optimal selection of experimental design criteria in kinetic model discrimination
2023 Computer-aided chemical engineering/Computer aided chemical engineering software-paper Biochemistry, Genetics and Molecular Biology Viral Infectious Diseases and Gene Expression in Insects

Maerthe Theresa Tillmann, Federico Galvanin

4

citations
OWL2Go: Auto-generation of Go data models for OWL ontologies with integrated serialization and deserialization functionality
2020 SoftwareX software-paper Computer Science Semantic Web and Ontologies Open access

Stefan Dähling, Lukas Razik, Antonello Monti

3

citations
Diagnostic Expert Advisor: A platform for developing machine learning models on medical time-series data
2023 SoftwareX software-paper Computer Science Machine Learning in Healthcare Open access

Richard Polzin, Sebastian Johannes Fritsch, Konstantin Sharafutdinov, Gernot Marx, Andreas Schuppert

3

citations
mhn : a Python package for analyzing cancer progression with Mutual Hazard Networks
2025 Bioinformatics Advances software-paper Biochemistry, Genetics and Molecular Biology Cancer Genomics and Diagnostics Open access

Stefan Vocht, Y. Linda Hu, Kevin Rupp, Tilo Wettig, Lars Grasedyck, Niko Beerenwinkel, +2 more

3

citations
ProLoaF: Probabilistic load forecasting for power systems
2023 SoftwareX software-paper Engineering Energy Load and Power Forecasting Open access

Gonca Gürses-Tran, Antonello Monti

2

citations
MODE.behave: A Python Package for Discrete Choice Modeling
2023 The Journal of Open Source Software software-paper Economics, Econometrics and Finance Economic and Environmental Valuation Open access

Julian Reul, Thomas Grube, Jochen Linßen, Detlef Stolten

2

citations
PBAESA: A Python Package for Planetary-Boundary-Based Absolute Environmental Sustainability Assessment
2025 Zenodo (CERN European Organization for Nuclear Research) software-paper Open access

2

citations
ETHOS.TISED: A python package for temporal downscaling of solar irradiance
2026 SoftwareX software-paper Computer Science Solar Radiation and Photovoltaics Open access

Olalekan Omoyele, Julian Belina, Noor Titan Putri Hartono, Maximilian Hoffmann, Jann Michael Weinand, Miguel Larrañeta, +2 more

2

citations
MxlPy—Python package for mechanistic learning and hybrid modelling in life science
2024 Bioinformatics Advances software-paper Mathematics Mathematical Biology Tumor Growth Open access

Marvin van Aalst, Tim Nies, Tobias Pfennig, Anna Matuszyńska

1

citations
Version [2.0.0]-[ENTIRETY—sEmanNTIc pRovisioning and govErning ioT devices in smart energY domain]
2024 SoftwareX software-paper Computer Science IoT and Edge/Fog Computing Open access

Zhiyu Pan, Syed Junayed Ahmed Anta, Antonello Monti

0

citations
MxlPy - Python Package for Mechanistic Learning and Hybrid Modelling in Life Science
2025 Zenodo (CERN European Organization for Nuclear Research) software-paper Open access

0

citations
MxlPy - Python Package for Mechanistic Learning and Hybrid Modelling in Life Science
2025 Zenodo (CERN European Organization for Nuclear Research) software-paper Open access

0

citations