November 21, 2018 article Open access Deep generative modeling for single-cell transcriptomics Nature Methods DOI: 10.1038/s41592-018-0229-2 Full text (OA) OpenAlex Authors 0 Author list not loaded yet. Cited by 42 stored of 2,866 Search Sort Most cited Newest Oldest Patent citations Title Any typearticle review book-chapter conference-paper preprint dissertation book dataset other Any fieldAgricultural and Biological Sciences Arts and Humanities Biochemistry, Genetics and Molecular Biology Business, Management and Accounting Chemical Engineering Chemistry Computer Science Decision Sciences Dentistry Earth and Planetary Sciences Economics, Econometrics and Finance Energy Engineering Environmental Science Health Professions Immunology and Microbiology Materials Science Mathematics Medicine Neuroscience Nursing Pharmacology, Toxicology and Pharmaceutics Physics and Astronomy Psychology Social Sciences Veterinary Open access An in-depth comparison of linear and non-linear joint embedding methods for bulk and single-cell multi-omics 2023 Briefings in Bioinformatics article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access 12 citations Cell type matching across species using protein embeddings and transfer learning 2023 Bioinformatics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access 9 citations A comprehensive mouse kidney atlas enables rare cell population characterization and robust marker discovery 2023 iScience article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access 38 citations MASI enables fast model-free standardization and integration of single-cell transcriptomics data 2023 Communications Biology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access 4 citations An in-depth comparison of linear and non-linear joint embedding methods for bulk and single-cell multi-omics 2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access 3 citations Best practices for single-cell analysis across modalities 2023 Nature Reviews Genetics review Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access cited by 7 patents 1,043 citations Cell type matching across species using protein embeddings and transfer learning 2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access 0 citations Fast model-free standardization and integration of single-cell transcriptomics data 2023 Research Square preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access 0 citations Minuteman – A versatile cloud computational platform for collaborative research 2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Decision Sciences Scientific Computing and Data Management Open access 0 citations Discovery of drug–omics associations in type 2 diabetes with generative deep-learning models 2023 Nature Biotechnology article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access 109 citations Functional and spatial proteomics profiling reveals intra- and intercellular signaling crosstalk in colorectal cancer 2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Colorectal Cancer Treatments and Studies Open access 0 citations A comprehensive mouse kidney atlas enables rare cell population characterization and robust marker discovery 2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access 5 citations Fast model-free standardization and integration of single-cell transcriptomics data 2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access 0 citations Identifying commonalities between cell lines and tumors at the single cell level using Sobolev Alignment of deep generative models 2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access 2 citations Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches 2022 Cell article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access cited by 4 patents 1,021 citations SARS-CoV-2 infection triggers profibrotic macrophage responses and lung fibrosis 2021 Cell article Medicine COVID-19 Clinical Research Studies Open access cited by 5 patents 523 citations Spatial proteogenomics reveals distinct and evolutionarily-conserved hepatic macrophage niches 2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access 97 citations CBA: Cluster-Guided Batch Alignment for Single Cell RNA-seq 2021 Frontiers in Genetics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access 3 citations Transfer learning efficiently maps bone marrow cell types from mouse to human using single-cell RNA sequencing 2020 Communications Biology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access cited by 1 patent 38 citations SpaGE: Spatial Gene Enhancement using scRNA-seq 2020 Nucleic Acids Research article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access cited by 4 patents 223 citations 21–40 of 42 ← Previous Page 2 / 3 Next → References 0