Gene co-expression analysis for functional classification and gene–disease predictions

• Cell type heterogeneity in gene co-expression networks: implications for toxicological research

  2025 Briefings in Bioinformatics article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access

  3

  citations
• Introduction to correlation networks: Interdisciplinary approaches beyond thresholding

  2025 Physics Reports article Physics and Astronomy Complex Network Analysis Techniques Open access

  26

  citations
• Utilizing rat kidney gene co-expression networks to enhance safety assessment biomarker identification and human translation

  2025 iScience article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access

  4

  citations
• Utilizing gene co-expression networks with the rat kidney TXG-MAPr tool to enhance safety assessment, biomarker identification and human translation

  2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access

  1

  citations
• KidneyNetwork: using kidney-derived gene expression data to predict and prioritize novel genes involved in kidney disease

  2023 European Journal of Human Genetics article Biochemistry, Genetics and Molecular Biology Genomics and Rare Diseases Open access

  15

  citations
• De-novoreconstruction and identification of transcriptional gene regulatory network modules differentiating single-cell clusters

  2023 NAR Genomics and Bioinformatics article Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access

  8

  citations
• Validation of transcriptome signature reversion for drug repurposing in oncology

  2022 Briefings in Bioinformatics article Computer Science Computational Drug Discovery Methods Open access

  16

  citations
• NetTDP: permutation-based true discovery proportions for differential co-expression network analysis

  2022 Briefings in Bioinformatics article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access

  1

  citations
• Loss of hepatic SMLR1 causes hepatosteatosis and protects against atherosclerosis due to decreased hepatic VLDL secretion

  2022 Hepatology article Medicine Lipid metabolism and disorders Open access

  22

  citations
• KidneyNetwork: Using kidney-derived gene expression data to predict and prioritize novel genes involved in kidney disease

  2022 Research Square preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access

  2

  citations
• The Wild Sugarcane and Sorghum Kinomes: Insights Into Expansion, Diversification, and Expression Patterns

  2021 Frontiers in Plant Science article Agricultural and Biological Sciences Chromosomal and Genetic Variations Open access

  35

  citations
• The sugarcane and sorghum kinomes: insights into evolutionary expansion and diversification

  2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Chromosomal and Genetic Variations Open access

  0

  citations
• Recommendations for the analysis of gene expression data to identify intrinsic differences between similar tissues

  2020 Genomics article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access

  16

  citations

13 results