mRNA-Seq whole-transcriptome analysis of a single cell

• AtlasOT - The Fused Unbalanced Gromov-Wasserstein for Multimodal Integration of Disease Atlases

  2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  0

  citations
• Cell DiffErential Expression by Pooling (CellDEEP) highlights issues in differential gene expression in scRNA-seq

  2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  0

  citations
• PILOT-GM-VAE: patient-level analysis of single-cell disease atlas with optimal transport of Gaussian mixture variational autoencoders

  2025 Briefings in Bioinformatics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  0

  citations
• PILOT-GM-VAE: Patient-Level Analysis of single cell Disease Atlas with Optimal Transport of Gaussian Mixture Variational Autoencoders

  2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  0

  citations
• Unraveling Divergent Transcriptomic Profiles: A Comparative Single-Cell RNA Sequencing Study of Epithelium, Gingiva, and Periodontal Ligament Tissues

  2024 International Journal of Molecular Sciences article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  12

  citations
• Revealing Genetic Dynamics: scRNA-seq Unravels Modifications in Human PDL Cells across In Vivo and In Vitro Environments

  2024 International Journal of Molecular Sciences article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  2

  citations
• Spatial multi-omics: novel tools to study the complexity of cardiovascular diseases

  2024 Genome Medicine article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  106

  citations
• Mechanisms of kidney fibrosis and routes towards therapy

  2023 Trends in Endocrinology and Metabolism review Medicine Chronic Kidney Disease and Diabetes Open access

  129

  citations
• A spatially resolved atlas of healthy and injured kidney cell states

  2023 Nephrology Dialysis Transplantation article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  2

  citations
• Fibrosis in Pathology of Heart and Kidney: From Deep RNA-Sequencing to Novel Molecular Targets

  2023 Circulation Research article Medicine Cardiac Fibrosis and Remodeling Open access

  50

  citations
• Systems toxicology to advance human and environmental hazard assessment: A roadmap for advanced materials

  2022 Nano Today article Environmental Science Environmental Toxicology and Ecotoxicology Open access

  25

  citations
• Community-driven ELIXIR activities in single-cell omics

  2022 F1000Research article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  11

  citations
• Population genetics and demography of the coral-killing cyanobacteriosponge, Terpios hoshinota, in the Indo-West Pacific

  2022 PeerJ article Environmental Science Coral and Marine Ecosystems Studies Open access

  5

  citations
• Mapping the human kidney using single-cell genomics

  2022 Nature Reviews Nephrology review Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  71

  citations
• Single‐cell omics: Overview, analysis, and application in biomedical science

  2021 Journal of Cellular Biochemistry article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  43

  citations
• Unraveling the Complexity of the Cancer Microenvironment With Multidimensional Genomic and Cytometric Technologies

  2020 Frontiers in Oncology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access cited by 2 patents

  60

  citations
• Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data

  2020 Genome biology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  367

  citations
• Methods for Single-Cell Isolation and Preparation

  2020 Advances in experimental medicine and biology book-chapter Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics cited by 1 patent

  42

  citations

18 results