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Single-cell and spatial transcriptomics Sign in to save
Papers per year
Papers 306
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Differential dropout analysis captures biological variation in single-cell RNA sequencing data2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Gerard A. Bouland, Ahmed Essam Mahfouz, Marcel J. T. Reinders
3citations -
An in-depth comparison of linear and non-linear joint embedding methods for bulk and single-cell multi-omics2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Stavros Makrodimitris, Bram Pronk, Tamim Abdelaal, Marcel J. T. Reinders
3citations -
GRIDGENE: Guided Region Identification based on Density of GENEs – a transcript density-based approach to characterize tissues by spatial transcriptomics2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Ana Marta Sequeira, Marieke E. Ijsselsteijn, Miguel Rocha, Jessica P Roelands, Noel F.C.C. de Miranda
3citations -
Human Neocortical Glutamatergic Neurons Revealed Through Multimodal Profiling2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Rachel A. Dalley, Sarah Walling-Bell, Jeremy A. Miller, Femke Waleboer, Julian Thijssen, Audrey McCutcheon, +90 more
3citations -
Protocol for multispectral imaging on cryosections to map myeloid cell heterogeneity in its spatial context2023 STAR Protocols article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Elias B Wieland, Laura JAP Kempen, Chang Wei Lu, Marjo M. P. C. Donners, Erik A.L. Biessen, Pieter Goossens
2citations -
scE(match): Privacy-Preserving Cluster Matching of Single-Cell Data2024 IEEE International Conference on Trust, Security and Privacy in Computing and Communications (TrustCom) conference-paper Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics
Johannes Lohmöller, Jannis Scheiber, Rafael Kramann, Klaus Wehrle, Sikander Hayat, Jan Pennekamp
2citations -
SIngle cell level Genotyping Using scRna Data (SIGURD)2024 Briefings in Bioinformatics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Martin Graßhoff, Milena Kalmer, Nicolas Chatain, Kim Kricheldorf, Angela Maurer, Ralf Weiskirchen, +2 more
2citations -
Publisher Correction: A community-based transcriptomics classification and nomenclature of neocortical cell types2020 Nature Neuroscience erratum Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Rafael Yuste, Michael Hawrylycz, Nadia Aalling, Argel Aguilar‐Valles, Detlev Arendt, Rubén Armañanzas, +67 more
2citations -
Author Correction: A community-based transcriptomics classification and nomenclature of neocortical cell types2021 Nature Neuroscience erratum Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Rafael Yuste, Michael Hawrylycz, Nadia Aalling, Argel Aguilar‐Valles, Detlev Arendt, Rubén Armañanzas, +67 more
2citations -
MACA: Marker-based automatic cell-type annotation for single cell expression data2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Yang Xu, Simon J. Baumgart, Christian M. Stegmann, Sikander Hayat
2citations -
Semi-automated background removal limits loss of data and normalises the images for downstream analysis of imaging mass cytometry data2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Marieke E. Ijsselsteijn, Antonios Somarakis, Boudewijn P. F. Lelieveldt, Thomas Höllt, Noel F.C.C. de Miranda
2citations -
SpaceWalker: Interactive Gradient Exploration for Spatial Transcriptomics Data2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Chang Li, Julian Thijssen, Tamim Abdelaal, Thomas Höllt, Boudewijn P. F. Lelieveldt
2citations -
Low-input Nucleus Isolation and Multiplexing with Barcoded Antibodies of Mouse Sympathetic Ganglia for Single-nucleus RNA Sequencing2022 Journal of Visualized Experiments article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics
Yang Ge, Lieke van Roon, H. Sophia Chen, Ruben Methorst, Marco C. DeRuiter, Szymon M. Kiełbasa, +1 more
2citations -
Cytosplore-Transcriptomics: a scalable inter-active framework for single-cell RNA sequencing data analysis2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Tamim Abdelaal, Jeroen Eggermont, Thomas Höllt, Ahmed Essam Mahfouz, Marcel J. T. Reinders, Boudewijn P. F. Lelieveldt
2citations
Most active Aachen authors
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Ahmed Essam Mahfouz 8,589 citations overall60 papers
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Boudewijn P. F. Lelieveldt 16,420 citations overall34 papers
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