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Inferring spatially transient gene expression pattern from spatial transcriptomic studies2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Jan Kueckelhaus, Jasmin von Ehr, Vidhya Madapusi Ravi, Paulina Will, Kevin Joseph, Jürgen Beck, +4 more
53citations -
The Burden of Reliability: How Measurement Noise Limits Brain-Behaviour Predictions2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Functional Brain Connectivity Studies Open access
Martin Gell, Simon Bodo Eickhoff, Amir Omidvarnia, Vincent Küppers, Kaustubh R. Patil, Theodore Daniel Satterthwaite, +2 more
50citations -
A neural code for egocentric spatial maps in the human medial temporal lobe2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Memory and Neural Mechanisms Open access
Lukas Kunz, Armin Brandt, Peter Christoph Reinacher, Bernhard P. Staresina, Eric T. Reifenstein, Christoph T. Weidemann, +6 more
39citations -
Integrated intra- and intercellular signaling knowledge for multicellular omics analysis2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Dénes Türei, Alberto Valdeolivas, Lejla Gul, Nicolàs Palacio‐Escat, Olga Ivanova, Attila Gábor, +3 more
36citations -
Explainable multi-view framework for dissecting intercellular signaling from highly multiplexed spatial data2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Jovan Tanevski, Ricardo O. Ramirez Flores, Attila Gábor, Denis Schapiro, Julio Sáez-Rodríguez
28citations -
Experiments on localization accuracy with non-individual and individual HRTFs comparing static and dynamic reproduction methods2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Hearing Loss and Rehabilitation Open access
Josefa Oberem, Jan-Gerrit Richter, Dorothea Setzer, Julia C. Seibold, Iring Koch, Janina Fels
27citations -
Pyramidal cell types drive functionally distinct cortical activity patterns during decision-making2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Neural dynamics and brain function Open access
Simon Musall, Xiaonan Richard Sun, Hemanth Mohan, Xu An, Steven Gluf, Shu-Jing Li, +6 more
26citations -
The Impact of Digital Histopathology Batch Effect on Deep Learning Model Accuracy and Bias2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science AI in cancer detection Open access
Frederick Matthew Howard, James M. Dolezal, Sara E. Kochanny, Jefree J. Schulte, Heather Chen, Lara Rosaline Heij, +7 more
25citations -
Comparison of Resources and Methods to infer Cell-Cell Communication from Single-cell RNA Data2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Daniel Dimitrov, Dénes Türei, Charlotte Boys, James Shiniti Nagai, Ricardo O. Ramirez Flores, Hyojin Kim, +5 more
23citations -
Swarm learning for decentralized artificial intelligence in cancer histopathology2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science AI in cancer detection Open access
Oliver Lester Saldanha, Philip Quirke, Nicholas Paul West, Jacqueline A. James, Maurice Bernard Loughrey, Heike Irmgard Grabsch, +20 more
22citations -
Normative Modeling of Brain Morphometry Across the Lifespan Using CentileBrain: Algorithm Benchmarking and Model Optimization2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Functional Brain Connectivity Studies Open access
Ruiyang Ge, Yuetong Yu, Yi Xuan Qi, Yunan Vera Fan, Shiyu Chen, Chuntong Gao, +92 more
21citations -
standard-GEM: standardization of open-source genome-scale metabolic models2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Mihail Anton, Eivind Almaas, Rui Benfeitas, Sara Benito-Vaquerizo, Lars M. Blank, Andreas Dräger, +24 more
21citations -
Chemical signatures of human odour generate a unique neural code in the brain of Aedes aegypti mosquitoes2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Neurobiology and Insect Physiology Research Open access cited by 1 patent
Zhilei Zhao, Jessica L. Zung, Alexis L. Kriete, Azwad R Iqbal, Meg A. Younger, Benjamin John Matthews, +4 more
19citations -
CRISPR/Cas with ribonucleoprotein complexes and transiently selected telomere vectors allows highly efficient marker-free and multiple genome editing in Botrytis cinerea2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology CRISPR and Genetic Engineering Open access
Thomas Leisen, Fabian Bietz, Alex Wegner, Ulrich Schaffrath, David Scheuring, Felix Willmund, +3 more
18citations -
Haplotype Threading: Accurate Polyploid Phasing from Long Reads2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Sven D. Schrinner, Rebecca Serra Mari, Jana Ebler, Mikko Rautiainen, Lancelot Seillier, Julia J. Reimer, +3 more
18citations -
Causal integration of multi-omics data with prior knowledge to generate mechanistic hypotheses2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Aurélien J. F. Dugourd, Christoph Kuppe, Marco Sciacovelli, Enio Gjerga, Kristina Bennet Emdal, Dorte B. Bekker‐Jensen, +7 more
16citations -
Benchmarking artificial intelligence methods for end-to-end computational pathology2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science AI in cancer detection Open access
Narmin Ghaffari Laleh, Hannah Sophie Muti, Chiara Maria Lavinia Loeffler, Amelie Echle, Oliver Lester Saldanha, Faisal Mahmood, +17 more
15citations -
Adversarial attacks and adversarial robustness in computational pathology2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science Adversarial Robustness in Machine Learning Open access
Narmin Ghaffari Laleh, Daniel Truhn, Gregory Patrick Veldhuizen, Tianyu Han, Marko van Treeck, Roman David Buelow, +5 more
14citations