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Plant PhysioSpace: a robust tool to compare stress response across plant species2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Ali Hadizadeh Esfahani, Janina Maß, Asis Hallab, Bernhard Schuldt, David Nevarez, Björn Usadel, +3 more
1citations -
Cross-comparison of state of the art neuromorphological simulators on modern CPUs and GPUs using the Brain Scaffold Builder2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science Parallel Computing and Optimization Techniques Open access
Robin De Schepper, Nora Abi Akar, Thorsten Hater, B. F. B. Huisman, Egidio Ugo D'Angelo, Abigail Morrison, +1 more
2citations -
Comparison of Illumina Versus Nanopore 16S rRNA Gene Sequencing of the Human Nasal Microbiota2020 Preprints.org preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Astrid P. Heikema, Deborah Horst-Kreft, Stefan A. Boers, Rick Jansen, Saskia Hiltemann, Willem de Koning, +6 more
28citations -
Comparison of Resources and Methods to infer Cell-Cell Communication from Single-cell RNA Data2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Daniel Dimitrov, Dénes Türei, Charlotte Boys, James Shiniti Nagai, Ricardo O. Ramirez Flores, Hyojin Kim, +5 more
23citations -
Cell-cell Communication Inference from Single-cell RNA-Seq Data: a Comparison of Methods and Resources2021 Research Square preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Daniel Dimitrov, Dénes Türei, Charlotte Boys, James Shiniti Nagai, Ricardo Ramirez Flores, Hyojin Kim, +5 more
3citations -
PENGUIN: A rapid and efficient image preprocessing tool for multiplexed spatial proteomics2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques
Ana Marta Sequeira, Marieke E. Ijsselsteijn, Miguel Rocha, Noel F.C.C. de Miranda
3citations -
Linkage mapping vs Association: A comparison of two RADseq-based approaches to identify markers for homomorphic sex chromosomes in large genomes.2024 preprint Biochemistry, Genetics and Molecular Biology Genetic and Clinical Aspects of Sex Determination and Chromosomal Abnormalities Open access
James France, Wiesław Babik, Katarzyna Dudek, Marzena Marszałek, Ben Wielstra
2citations -
Systematic comparison of temporal transcriptional responses to hepatotoxicants in primary human hepatocytes and HepaRG cells using concentration-response modelling of gene co-expression networks2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Pharmacology, Toxicology and Pharmaceutics Drug-Induced Hepatotoxicity and Protection Open access
Steven J. Kunnen, Emma Arnesdotter, Christian Tobias Willenbockel, Mathieu Vinken, Bob van de Water
0citations -
MO-IOHinspector: Anytime Benchmarking of Multi-Objective Algorithms using IOHprofiler2024 arXiv (Cornell University) preprint Computer Science Advanced Multi-Objective Optimization Algorithms Open access
Diederick Vermetten, Jeroen Rook, Oliver Ludger Preuß, Jacob de Nobel, Carola Doerr, Manuel López‐Ibáñez, +2 more
0citations -
Quantifying discrepancies and improving consistency in Life Cycle Assessment tools, databases and methods with rosetta2026 Research Square preprint Environmental Science Environmental Impact and Sustainability Open access
Cédric Furrer, Mélanie Douziech, Jeroen B. Guinée, Valerio Barbarossa, Michael Alan Martin, Thomas Nemecek, +1 more
0citations -
The 6th International Verification of Neural Networks Competition (VNN-COMP 2025): Summary and Results2025 arXiv (Cornell University) preprint Computer Science Formal Methods in Verification Open access
Konstantin Kaulen, Tobias Ladner, Stanley Bak, Christopher Brix, Hai Duong, Thomas Flinkow, +5 more
4citations -
Category-specific fMRI correlates of picture naming: A study with Arabs and Filipinos2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Neurobiology of Language and Bilingualism Open access
Haythum Osama Tayeb, Jamaan Alghamdi, Naushad Ahmed, Yousef Alsawwaf, Khalid Alsafi, Abrar O. Baduwailan, +4 more
0citations -
WOMBAT-P: Benchmarking Label-Free Proteomics Data Analysis Workflows2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Chemistry Advanced Proteomics Techniques and Applications Open access
David Bouyssié, Pınar Altıner, Salvador Capella-Gutiérrez, José M. Fernández, Yanick Paco Hagemeijer, Peter L. Horvatovich, +12 more
2citations -
The Third International Verification of Neural Networks Competition (VNN-COMP 2022): Summary and Results2022 arXiv (Cornell University) preprint Computer Science Formal Methods in Verification Open access
Mark Niklas Müller, Christopher Brix, Stanley Bak, Changliu Liu, Taylor Thomas Johnson
28citations