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PENGUIN: A rapid and efficient image preprocessing tool for multiplexed spatial proteomics2024 Computational and Structural Biotechnology Journal article Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access
Ana Marta Sequeira, Marieke E. Ijsselsteijn, Miguel Rocha, Noel F.C.C. de Miranda
13citations -
Reference-based cell type matching of in situ image-based spatial transcriptomics data on primary visual cortex of mouse brain2023 Scientific Reports article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Yun Zhang, Jeremy A. Miller, Jeongbin Park, Boudewijn P. F. Lelieveldt, Brian Long, Tamim Abdelaal, +12 more
20citations -
Single-Sided Magnetic Particle Imaging Device With Offset Field Based Spatial Encoding2024 IEEE Transactions on Medical Imaging article Engineering Characterization and Applications of Magnetic Nanoparticles
Qibin Wang, Zhonghao Zhang, Lei Li, Franziska Schrank, Yu Zeng, Pengyue Guo, +3 more
13citations -
Image-guided alignment of consecutive multi-modal tissue slides2026 Cell Reports Methods article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Benedetta Manzato, Claudio Novella-Rausell, Gangqi Wang, Nina Ogrinc, Rosalie G. J. Rietjens, Marleen E Jacobs, +3 more
0citations -
Visual cohort comparison for spatial single-cell omics-data2020 IEEE Transactions on Visualization and Computer Graphics article Computer Science Data Visualization and Analytics Open access
Antonios Somarakis, Marieke E. Ijsselsteijn, Sietse J. Luk, Boyd Kenkhuis, Noel F.C.C. de Miranda, Boudewijn P. F. Lelieveldt, +1 more
20citations -
Multimodal Imaging-guided Tissue Sampling Combined with Multiomics Profiling Informs on Spatial Molecular and Cellular Heterogeneity Linked to Distinct Imaging Features in Diffuse Gliomas
Niklas Joern Tillmanns, David Pauck, Michael Sabel, Marion Rapp, Quinn Volz, Bastian Malzkorn, +10 more
0citations -
Associations between spatial distribution of immune cell subsets and clinical outcomes in patients with advanced melanoma treated with immune checkpoint inhibitors: results from the PUMA challenge
Mark Schuiveling, Hong Liu, Daniel Eek, Martina Hanusová, Isabella A.J. van Duin, Laurens S. ter Maat, +32 more
0citations -
Automatic landmark correspondence detection in medical images with an application to deformable image registration2023 Journal of medical imaging article Computer Science Medical Image Segmentation Techniques Open access
Monika Grewal, Jan Wiersma, Henrike G. Westerveld, Peter A. N. Bosman, Tanja Alderliesten
15citations -
Deep Learning-based Non-rigid Image Registration for High-dose Rate Brachytherapy in Inter-fraction Cervical Cancer2022 Journal of Imaging Informatics in Medicine article Physics and Astronomy Advanced Radiotherapy Techniques Open access
Mohammad Salehi, Alireza Vafaei Sadr, Seied Rabi Mahdavi, Hossein Arabi, Isaac Shiri, Reza Reiazi
27citations -
Understanding Kinematics of the Orthogonal Cutting Using Digital Image Correlation—Measurement and Analysis2021 Journal of Manufacturing Science and Engineering article Engineering Advanced machining processes and optimization
Dong Zhang, Markus Meurer, Xiaoming Zhang, Thomas Bergs, Han Ding
19citations -
Workflow for high‐resolution phase segmentation of cement clinker from combined BSE image and EDX spectral data2021 Journal of Microscopy article Materials Science Electron and X-Ray Spectroscopy Techniques Open access
Mingze Jiang, Christiane Rößler, Eva Wellmann, Jop Klaver, Florian Kleiner, Joyce Schmatz
10citations -
Digitalizing metallic materials from image segmentation to multiscale solutions via physics informed operator learning2025 npj Computational Materials article Materials Science Machine Learning in Materials Science Open access
Shahed Rezaei, Kianoosh Taghikhani, Alexandre Viardin, Reza Najian Asl, Nikhil Vijay Jagtap, David Benjamin Bailly, +7 more
7citations -
Explainable multiview framework for dissecting spatial relationships from highly multiplexed data2022 Genome biology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Jovan Tanevski, Ricardo O. Ramirez Flores, Attila Gábor, Denis Schapiro, Julio Sáez-Rodríguez
291citations