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PENGUIN: A rapid and efficient image preprocessing tool for multiplexed spatial proteomics2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques
Ana Marta Sequeira, Marieke E. Ijsselsteijn, Miguel Rocha, Noel F.C.C. de Miranda
3citations -
PENGUIN: A rapid and efficient image preprocessing tool for multiplexed spatial proteomics2024 Computational and Structural Biotechnology Journal article Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access
Ana Marta Sequeira, Marieke E. Ijsselsteijn, Miguel Rocha, Noel F.C.C. de Miranda
13citations -
SHMoAReg: Spark Deformable Image Registration via Spatial Heterogeneous Mixture of Experts and Attention Heads2025 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) conference-paper Computer Science Medical Image Segmentation Techniques
Yuxi Zheng, Jianhui Feng, Tianran Li, Marius Staring, Yuchuan Qiao
0citations -
Reference-based cell type matching of in situ image-based spatial transcriptomics data on primary visual cortex of mouse brain2023 Scientific Reports article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Yun Zhang, Jeremy A. Miller, Jeongbin Park, Boudewijn P. F. Lelieveldt, Brian Long, Tamim Abdelaal, +12 more
20citations -
Author response: Using positional information to provide context for biological image analysis with MorphoGraphX 2.02022 peer-review Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access
Soeren Strauss, Adam Runions, Brendan Lane, Dennis Eschweiler, Namrata Bajpai, Nicola Trozzi, +16 more
1citations -
Single-Sided Magnetic Particle Imaging Device With Offset Field Based Spatial Encoding2024 IEEE Transactions on Medical Imaging article Engineering Characterization and Applications of Magnetic Nanoparticles
Qibin Wang, Zhonghao Zhang, Lei Li, Franziska Schrank, Yu Zeng, Pengyue Guo, +3 more
13citations -
TransDeepLab: Convolution-Free Transformer-based DeepLab v3+ for Medical Image Segmentation2022 arXiv (Cornell University) preprint Computer Science Medical Image Segmentation Techniques Open access
Reza Azad, Moein Heidari, Moein Shariatnia, Ehsan Khodapanah Aghdam, Sanaz Karimijafarbigloo, Ehsan Adeli, +1 more
6citations -
Image-guided alignment of consecutive multi-modal tissue slides2026 Cell Reports Methods article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Benedetta Manzato, Claudio Novella-Rausell, Gangqi Wang, Nina Ogrinc, Rosalie G. J. Rietjens, Marleen E Jacobs, +3 more
0citations -
3D Point Cloud Compression with Recurrent Neural Network and Image Compression Methods2022 IEEE Intelligent Vehicles Symposium conference-paper Computer Science Advanced Data Compression Techniques Open access
Till Beemelmanns, Yuchen Tao, Bastian Lampe, Lennart Reiher, Raphael van Kempen, Timo Woopen, +1 more
11citations -
Self-supervised image restoration in coherent X-ray neuronal microscopy2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Physics and Astronomy Advanced X-ray Imaging Techniques Open access
Alfred Laugros, Peter Cloetens, Carles Bosch, Richard Schoonhoven, Liam Pavlovic, Aaron T. Kuan, +12 more
8citations -
Integration of deep learning-based image analysis and genomic data in cancer pathology: A systematic review2021 European Journal of Cancer review Computer Science AI in cancer detection Open access cited by 1 patent
Lucas Schneider, Sara Laiouar-Pedari, Sara Kuntz, Eva Krieghoff‐Henning, Achim Hekler, Jakob Nikolas Kather, +3 more
102citations -
Visual cohort comparison for spatial single-cell omics-data2020 IEEE Transactions on Visualization and Computer Graphics article Computer Science Data Visualization and Analytics Open access
Antonios Somarakis, Marieke E. Ijsselsteijn, Sietse J. Luk, Boyd Kenkhuis, Noel F.C.C. de Miranda, Boudewijn P. F. Lelieveldt, +1 more
20citations -
AutoSourceID-Classifier. Star-Galaxy Classification using a Convolutional Neural Network with Spatial Information2023 arXiv (Cornell University) preprint Physics and Astronomy Galaxies: Formation, Evolution, Phenomena Open access
Fiorenzo Stoppa, Saptashwa Bhattacharyya, Paul M. Vreeswijk, S. Caron, Gabrijela Zaharijaš, S. Bloemen, +6 more
1citations -
TransDeepLab: Convolution-Free Transformer-Based DeepLab v3+ for Medical Image Segmentation2022 Lecture notes in computer science conference-paper Computer Science Medical Image Segmentation Techniques cited by 1 patent
Reza Azad, Moein Heidari, Moein Shariatnia, Ehsan Khodapanah Aghdam, Sanaz Karimijafarbigloo, Ehsan Adeli, +1 more
169citations