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Experimental and computational technologies to dissect the kidney at the single-cell level2020 Nephrology Dialysis Transplantation article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Christoph Kuppe, Javier Perales-Patón, Julio Sáez-Rodríguez, Rafael Kramann
12citations -
Single‐cell omics: Overview, analysis, and application in biomedical science2021 Journal of Cellular Biochemistry article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Catarina M. Stein, Ralf Weiskirchen, Frédérik Damm, Paulina M. Strzelecka
43citations -
Cell-type-specific damage scores reveal kidney and liver disease trajectories in single-cell and spatial transcriptomics2026 Cell Genomics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Tsimafei Padvitski, Paula Unger Avila, He Chen, Cem Özel, Fabian Braun, Marie-Kristin Kroll, +16 more
1citations -
Single-Cell Integration and Multi-Modal Profiling Reveals Phenotypes and Spatial Organization of Neutrophils in Colorectal Cancer2025 SSRN Electronic Journal preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Valentin Marteau, Niloofar Nemati, Kristina Handler, Deeksha Raju, Alexander Kirchmair, Dietmar Rieder, +37 more
0citations -
Proteomics for Low Cell Numbers: How to Optimize the Sample Preparation Workflow for Mass Spectrometry Analysis2021 Journal of Proteome Research article Chemistry Advanced Proteomics Techniques and Applications Open access
Sara Kassem, Kyra van der Pan, Anniek L. de Jager, Brigitta A. E. Naber, Inge F. de Laat, Alesha Louis, +3 more
37citations -
Multi-omic analyses in immune cell development with lessons learned from T cell development2023 Frontiers in Cell and Developmental Biology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Martijn Cordes, Karin Pike‐Overzet, Erik B. van den Akker, Frank J. T. Staal, Kirsten Canté-Barrett
9citations -
Functional and spatial proteomics profiling reveals intra- and intercellular signaling crosstalk in colorectal cancer2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Colorectal Cancer Treatments and Studies Open access
Christina Plattner, Giorgia Lamberti, Peter Blattmann, Alexander Kirchmair, Dietmar Rieder, Zuzana Loncová, +23 more
0citations -
Quantitative proteomics of small numbers of closely-related cells: Selection of the optimal method for a clinical setting2022 Frontiers in Medicine article Chemistry Advanced Proteomics Techniques and Applications Open access
Kyra van der Pan, Sara Kassem, Indu Khatri, Arnoud H. de Ru, George M. C. Janssen, Rayman T.N. Tjokrodirijo, +15 more
6citations -
Targeted Co-delivery of Tumor Antigen and α-Galactosylceramide to CD141+ Dendritic Cells Induces a Potent Tumor Antigen-Specific Human CD8+ T Cell Response in Human Immune System Mice2020 Frontiers in Immunology article Immunology and Microbiology Immunotherapy and Immune Responses Open access
Jing Huang, Jing Zhou, Reem Ghinnagow, Toshiyuki Seki, Sho Iketani, Daphnée Soulard, +5 more
27citations -
Serum proteomics of adults with acute liver failure provides mechanistic insights and attractive prognostic biomarkers2025 JHEP Reports article Pharmacology, Toxicology and Pharmaceutics Drug-Induced Hepatotoxicity and Protection Open access
Katharina Remih, Franziska-Maria Hufnagel, Anna Sophie Karl, Valerie L. Durkalski‐Mauldin, William M. Lee, Constantine Jason Karvellas, +14 more
4citations -
Distinct morphological features of malignant cells in large B-cell lymphoma identified by soft-segmentation in imaging-based spatial proteomics2025 Blood conference-abstract Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access
Troy Noordenbos, Marieke E. Ijsselsteijn, Noel de Miranda, Joost S.P. Vermaat, Mohammad Shahrokh Esfahani
0citations -
Unraveling the Complexity of the Cancer Microenvironment With Multidimensional Genomic and Cytometric Technologies2020 Frontiers in Oncology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access cited by 2 patents
Natasja L. De Vries, Ahmed Essam Mahfouz, Frits Koning, Noel F.C.C. de Miranda
60citations -
Single cell guided deconvolution of bulk transcriptomics recapitulates differentiation stages of acute myeloid leukemia and predicts drug response2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Acute Myeloid Leukemia Research Open access
Emin Onur Karakaslar, Jeppe F. Severens, Elena Sánchez‐López, Peter A. van Veelen, Mihaela Zlei, Jacques J. M. van Dongen, +7 more
1citations -
Human umbilical cord mesenchymal stem cell-derived treatment of severe pulmonary arterial hypertension2022 Nature Cardiovascular Research article Medicine Mesenchymal stem cell research Open access cited by 3 patents
Georg Hansmann, Philippe Chouvarine, Franziska Diekmann, Martin A. Giera, Markus Ralser, Michael Mülleder, +4 more
23citations -
AI-powered virtual tissues from spatial proteomics for clinical diagnostics and biomedical discovery2025 arXiv (Cornell University) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Johann Wenckstern, Eeshaan Jain, Kiril Vasilev, Matteo Pariset, Phil Fang Cheng, Olivier Alain Michielin, +3 more
10citations