Papers matching “single-cell RNA sequencing” 53
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Cytosplore-Transcriptomics: a scalable inter-active framework for single-cell RNA sequenc-ing data analysis2020 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Tamim Abdelaal, Jeroen Eggermont, Thomas Höllt, Ahmed Essam Mahfouz, Marcel J. T. Reinders, Boudewijn P. F. Lelieveldt
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Cytosplore-Transcriptomics: a scalable inter-active framework for single-cell RNA sequenc-ing data analysis2020 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Tamim Abdelaal, Jeroen Eggermont, Thomas Höllt, Ahmed Essam Mahfouz, Marcel J. T. Reinders, Boudewijn P. F. Lelieveldt
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Differential analysis of binarized single-cell RNA sequencing data captures biological variation2021 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Gerard A. Bouland, Ahmed Essam Mahfouz, Marcel J. T. Reinders
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Differential analysis of binarized single-cell RNA sequencing data captures biological variation2021 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Gerard A. Bouland, Ahmed Essam Mahfouz, Marcel J. T. Reinders
0citations -
SIRV: Spatial inference of RNA velocity at the single-cell resolution2022 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Tamim Abdelaal, Laurens Grossouw, R. Jeroen Pasterkamp, Boudewijn P. F. Lelieveldt, Marcel J. T. Reinders, Ahmed Essam Mahfouz
1citations -
SIRV: Spatial inference of RNA velocity at the single-cell resolution2022 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Tamim Abdelaal, Laurens Grossouw, R. Jeroen Pasterkamp, Boudewijn P. F. Lelieveldt, Marcel J. T. Reinders, Ahmed Essam Mahfouz
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Dissecting CD8+ T cell pathology of severe SARS-CoV-2 infection by single-cell epitope mapping2021 Zenodo (CERN European Organization for Nuclear Research) dataset Medicine SARS-CoV-2 and COVID-19 Research Open access
Felix Schreibing, Monica Toft Hannani, Fabio Ticconi, Eleanor Fewings, James Shiniti Nagai, Matthias Begemann, +18 more
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Data from "Single-cell integration and multi-modal profiling reveals phenotypes and spatial organization of neutrophils in colorectal cancer"0citations
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Dissecting CD8+ T cell pathology of severe SARS-CoV-2 infection by single-cell immunoprofiling2022 Zenodo (CERN European Organization for Nuclear Research) dataset Medicine SARS-CoV-2 and COVID-19 Research Open access
Felix Schreibing, Monica Toft Hannani, Hyojin Kim, James Shiniti Nagai, Fabio Ticconi, Eleanor Fewings, +22 more
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Dissecting CD8+ T cell pathology of severe SARS-CoV-2 infection by single-cell immunoprofiling2022 Zenodo (CERN European Organization for Nuclear Research) dataset Medicine SARS-CoV-2 and COVID-19 Research Open access
Felix Schreibing, Monica Toft Hannani, Hyojin Kim, James Shiniti Nagai, Fabio Ticconi, Eleanor Fewings, +22 more
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CellGOSSIP (Cell-specific Graph Operation Strategy on Signaling of Intracellular Pathways) datasets2026 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Giulia Cesaro, James S. Nagai, Giacomo Baruzzo, Barbara Di Camillo, Ivan G. Costa
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CellGOSSIP (Cell-specific Graph Operation Strategy on Signaling of Intracellular Pathways) datasets2026 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Giulia Cesaro, James S. Nagai, Giacomo Baruzzo, Barbara Di Camillo, Ivan G. Costa
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Input data of manuscript "CACTUS: integrating clonal architecture with genomic clustering and transcriptome profiling of single tumor cells"2021 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Shadi Darvish Shafighi, Szymon M. Kiełbasa, Cornelis A.M. van Bergen, Ewa Szczurek
1citations