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Identification and characterization of an immunodominant SARS-CoV-2-specific CD8 T cell response2020 preprint Biochemistry, Genetics and Molecular Biology vaccines and immunoinformatics approaches Open access
Anastasia Gangaev, Steven L. C. Ketelaars, Olga I. Isaeva, Sanne Patiwael, Anna Dopler, Kelly Hoefakker, +14 more
4citations -
Genomic signatures associated with small-scale farming landscapes in wild bee populations: potential adaptive response under high gene flow2026 Research Square preprint Biochemistry, Genetics and Molecular Biology Genetic diversity and population structure Open access
Octávio Salgueiro Paulo, André Henriques, Paulo De Sousa, Sara Silva, Davide Galhofa, Luísa G. Carvalheiro, +2 more
0citations -
Transcriptomic mapping of the inter-individual variability of cellular stress response activation in primary human hepatocytes2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Pharmacology, Toxicology and Pharmaceutics Drug-Induced Hepatotoxicity and Protection Open access
Marije Niemeijer, Witold Więcek, Suzanna Huppelschoten, Peter Bouwman, Audrey Baze, Celine Parmentier, +4 more
3citations -
Temporal and spatial composition of the tumor microenvironment predicts response to immune checkpoint inhibition2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Cancer Immunotherapy and Biomarkers Open access
Noah F. Greenwald, Iris Nederlof, Daisy Yi Ding, Seongyeol Park, Alex Kong, Kathleen E. Houlahan, +29 more
7citations -
Land-use impacts on plant functional diversity throughout Europe2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Environmental Science Ecology and Vegetation Dynamics Studies Open access
Francesca Rosa, Peter M. van Bodegom, Stefanie Hellweg, Stephan Pfister, Idoia Biurrun, Steffen Boch, +18 more
2citations -
Phyletic distribution and diversification of the Phage Shock Protein stress response system in bacteria and archaea2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bacterial Genetics and Biotechnology Open access
Philipp F. Popp, Vadim M. Gumerov, Ekaterina P. Andrianova, Lisa Bewersdorf, Thorsten Mascher, Igor B. Zhulin, +1 more
5citations -
Autophagy is responsible for the accumulation of proteogenic dipeptides in response to heat stress in Arabidopsis thaliana2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Autophagy in Disease and Therapy Open access
Venkatesh P. Thirumalaikumar, Mateusz Maciej Wagner, Salma Balazadeh, Aleksandra Skirycz
5citations -
The genetic diversity of the soybean rust pathogen Phakopsora pachyrhizi has been driven by two major evolutionary lineages2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Yeasts and Rust Fungi Studies Open access
Vinícius Delgado da Rocha, Everton Geraldo Capote Ferreira, Fernanda Machado Castanho, Marcia Kamogae Kuwahara, Claudia Vieira Godoy, M. C. Meyer, +10 more
2citations -
Reassessing Human Genetic Diversity in T Cell Studies.2023 Research Square preprint Biochemistry, Genetics and Molecular Biology Race, Genetics, and Society Open access
Ferenc A. Scheeren, Roderick C. Slieker, Daniël O. Warmerdam, Maarten H. Vermeer, Remco van Doorn, Mirjam H.M. Heemskerk
0citations -
Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Trygve E. Bakken, Nikolas L. Jorstad, Qiwen Hu, Blue B. Lake, Wei Tian, Brian E. Kalmbach, +94 more
89citations -
SeroBA(v2.0) and SeroBAnk: a robust genome-based serotyping scheme and comprehensive atlas of capsular diversity in Streptococcus pneumoniae2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Pneumonia and Respiratory Infections Open access
Oliver Lorenz, Alannah C. King, Harry C. H. Hung, Feroze Ganaie, Anne L. Wyllie, Sam Manna, +8 more
3citations -
Life history traits influence the dynamics of genetic diversity in a refugium population undergoing expansion and contraction2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genetic diversity and population structure Open access
Gabriele Maria Sgarlata, David Soriano‐Paños, Rita Rasteiro, Tiago Maié, Tiago Paixão, Rémi Tournebize, +1 more
2citations -
Transcriptional response to host chemical cues underpins expansion of host range in a fungal plant pathogen lineage2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Plant pathogens and resistance mechanisms Open access
Stefan Kusch, Justine Larrouy, Heba M. M. Ibrahim, Noémie Gasset, Olivier Navaud, Malick Mbengué, +4 more
1citations -
Comprehensive Analysis of Human Dendritic Spine Morphology and Density: Exploring Diversity of Human Dendritic Spines2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Neuroscience and Neuropharmacology Research
Kerstin D Schünemann, Roxanne M Hattingh, Matthijs B Verhoog, Danqing Yang, Aniella Bak, Sabrina Peter, +14 more
0citations -
Serotonin modulation of metabolism and stress response in Pseudomonas fluorescens2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bacterial Genetics and Biotechnology
Barbora Waclawiková, Markus Schwalbe, Diana Ilyaskina, Semih Toptas, Nicola U. Thome, Somayah S. Elsayed, +3 more
0citations -
pmTR database: population matched (PM) germline allelic variants of T-cell receptor ( TR ) loci2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genetic Associations and Epidemiology Open access
Julian Dekker, Jacques J. M. van Dongen, Marcel J. T. Reinders, Indu Khatri
0citations -
Keep looking at the negative side: improved detection of drug-induced liver injury with non-hepatotoxicant data oversampling2025 ChemRxiv preprint Pharmacology, Toxicology and Pharmaceutics Drug-Induced Hepatotoxicity and Protection Open access
Olivier J. M. Béquignon, Steven Wink, Steven W. Hiemstra, J. E. Fokkelman-Klip, Wouter den Hollander, Giulia Callegaro, +2 more
0citations -
Keep looking at the negative side: improved detection of drug-induced liver injury with non-hepatotoxicant data oversampling2025 ChemRxiv preprint Pharmacology, Toxicology and Pharmaceutics Drug-Induced Hepatotoxicity and Protection Open access
Olivier J. M. Béquignon, Steven Wink, Steven W. Hiemstra, J. E. Fokkelman-Klip, Wouter den Hollander, Giulia Callegaro, +2 more
0citations -
pmTR database: population matched (PM) germline allelic variants of T-cell receptor (TR) loci2021 Research Square preprint Biochemistry, Genetics and Molecular Biology Genetic Associations and Epidemiology Open access
Julian Dekker, Jacques J. M. van Dongen, Marcel J. T. Reinders, Indu Khatri
0citations -
Reference-based comparison of adaptive immune receptor repertoires2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology T-cell and B-cell Immunology Open access
Cédric R. Weber, Teresa Rubio, Longlong Wang, Wei Zhang, Philippe Auguste Robert, Rahmad Akbar, +9 more
5citations -
Urbanisation drives non-linear, guild-specific restructuring of fungal communities in coastal dune habitats2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Mycorrhizal Fungi and Plant Interactions Open access
Laertis Bechlis, Thom Stoppelenburg, Jan-Berend W Stuut, Willem Renema, S. Emilia Hannula, Jan‐Niklas Macher
0citations