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Development of an amplicon nanopore sequencing strategy for detection of mutations conferring intermediate resistance to vancomycin in Staphylococcus aureus strains2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Antimicrobial Resistance in Staphylococcus Open access
Abraham G Moller, Robert A. Petit, Michelle H. Davis, Timothy D. Read
0citations -
Design and performance of a long-read sequencing panel for pharmacogenomics2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Pharmacology, Toxicology and Pharmaceutics Pharmacogenetics and Drug Metabolism Open access
Maaike van der Lee, Loes Busscher, Roberta Menafra, Qinglian Zhai, Redmar R. van den Berg, Sarah B. Kingan, +6 more
2citations -
Determining off-target effects of splice-switching antisense oligonucleotides using short read RNAseq in neuronally differentiated human induced pluripotent stem cells2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology RNA Research and Splicing Open access
Elsa C. Kuijper, Linda M. van der Graaf, Barry A. Pepers, Mariana Guimarães Ramos, Sylvia Korhorn, Davy Cats, +4 more
1citations -
Cooperative Communication with Humans Evolved to Emerge Early in Dogs2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Human-Animal Interaction Studies Open access
Hannah Salomons, Kyle C. M. Smith, Megan Callahan-Beckel, Margaret K. Callahan, Kerinne Levy, Brenda S. Kennedy, +8 more
4citations -
Benchmarking computational methods for B-cell receptor reconstruction from single-cell RNA-seq data2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Tommaso Andreani, Linda M. Slot, Samuel Gabillard, Carsten Struebing, Claus Reimertz, Yaligara Veeranagouda, +6 more
4citations -
Towards complete and error-free genome assemblies of all vertebrate species2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Arang Rhie, Shane McCarthy, Olivier D. Fedrigo, Joana Damas, Giulio Formenti, Sergey Koren, +92 more
197citations -
An accelerated thrombosis model for computational fluid dynamics simulations in rotary blood pumps2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Engineering Mechanical Circulatory Support Devices Open access
Christopher Blum, Sascha Groß‐Hardt, Ulrich Steinseifer, Michael Neidlin
3citations -
SECEDO: SNV-based subclone detection using ultra-low coverage single-cell DNA sequencing2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Cancer Genomics and Diagnostics Open access
Hana Rozhoňová, Daniel Danciu, Stefan G. Stark, Gunnar Rätsch, André Kahles, Kjong-Van Lehmann
1citations -
Genotyping by Sequencing for Estimating Relative Abundances of Diatom Taxa in Mock Communities2022 Research Square preprint Environmental Science Environmental DNA in Biodiversity Studies Open access
Ozan Çiftçi, Cornelis A. M. Wagemaker, Adrienne Mertens, Peter M. van Bodegom, Walter Pirovano, Barbara Gravendeel
0citations -
Comparison of Illumina Versus Nanopore 16S rRNA Gene Sequencing of the Human Nasal Microbiota2020 Preprints.org preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Astrid P. Heikema, Deborah Horst-Kreft, Stefan A. Boers, Rick Jansen, Saskia Hiltemann, Willem de Koning, +6 more
28citations -
SeroBA(v2.0) and SeroBAnk: a robust genome-based serotyping scheme and comprehensive atlas of capsular diversity in Streptococcus pneumoniae2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Pneumonia and Respiratory Infections Open access
Oliver Lorenz, Alannah C. King, Harry C. H. Hung, Feroze Ganaie, Anne L. Wyllie, Sam Manna, +8 more
3citations -
T cell correction pipeline for Inborn Errors of Immunity2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology CRISPR and Genetic Engineering Open access
Katariina Mamia, Solrun Kolbeinsdottir, Zhuokun Li, Kornel Labun, Anna Zofia Komisarczuk, Salla Keskitalo, +22 more
1citations -
Sequence determinants of efficient exon 44 skipping in Duchenne muscular dystrophy define design principles for steric-blocking antisense oligonucleotides2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Muscle Physiology and Disorders Open access
Enyang Han, Katherine Webster, Tiberiu Loredan Stan, C. Tanganyika-de Winter, Elizabeth M. van der Pijl, Jordan Tahquechi, +7 more
0citations -
The genome of New Zealand trevally (Carangidae: Pseudocaranx georgianus) uncovers a XY sex determination locus2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genetic and Clinical Aspects of Sex Determination and Chromosomal Abnormalities Open access
Mike Ruigrok, Andrew S. Catanach, Deepa R. Bowatte, Marcus W. Davy, Roy D. Storey, Noémie Valenza-Troubat, +5 more
6citations