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Single-cell reference mapping to construct and extend cell-type hierarchies2023 NAR Genomics and Bioinformatics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Lieke Michielsen, Mohammad Lotfollahi, Daniel C. Strobl, Lisa Sikkema, Marcel J. T. Reinders, Fabian Joachim Theis, +1 more
43citations -
Single-cell reference mapping to construct and extend cell-type hierarchies2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Lieke Michielsen, Mohammad Lotfollahi, Daniel C. Strobl, Lisa Sikkema, Marcel J. T. Reinders, Fabian Joachim Theis, +1 more
7citations -
Allogeneic Hematopoietic Stem Cell Transplantation (allo-HSCT) Outcomes in Leukocyte Adhesion Deficiency Type -I2024 Blood conference-abstract Immunology and Microbiology Immunodeficiency and Autoimmune Disorders Open access
Claire Booth, Luuk A. Gras, Hawazen Saleh Alsaedi, Amir Ali Hamidieh, Mor Sény Gueye, Mary Anne Slatter, +18 more
0citations -
Paenitracins, a novel family of bacitracin-type nonribosomal peptide antibiotics produced by plant-associated Paenibacillus species2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Microbial Natural Products and Biosynthesis Open access
Nataliia V. Machushynets, Somayah S. Elsayed, Chao Du, Vladyslav Lysenko, Mercedes de la Cruz, Pilar Sánchez, +4 more
0citations -
Fine-Grained Emotion Recognition via In-Context Learning2025 ACM International Conference on Information and Knowledge Management (CIKM) conference-paper Computer Science Sentiment Analysis and Opinion Mining Open access
Zhaochun Ren, Zhou Yang, Chenglong Ye, Haizhou Sun, Xiaofei Zhu, Xiangwen Liao
0citations -
monarch-initiative/monarch-app: v1.31.02026 Zenodo (CERN European Organization for Nuclear Research) software Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
varun_divya, Kevin Schaper, Vincent Rubinetti, Patrick Golden, Sierra Moxon, Corey Cox, +17 more
0citations -
Global Root Traits (GRooT) Database2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Environmental Science Ecology and Vegetation Dynamics Studies Open access
Nathaly R. Guerrero‐Ramírez, Liesje Mommer, Grégoire T. Freschet, Colleen Marie Iversen, Michael McCormack, Jens Kattge, +43 more
8citations -
Effects of Sodium-Glucose Cotransporter-2 Inhibitors on Kidney Outcomes across Baseline Cardiovascular-Kidney-Metabolic Conditions2024 Journal of the American Society of Nephrology article Medicine Diabetes Treatment and Management Open access
Tariq Jamal Siddiqi, David Z.I. Cherney, Hasan Fareed Siddiqui, Tazeen H. Jafar, James Louis Januzzi, Muhammad Shahzeb Khan, +8 more
17citations -
CMEO: a metadata-centric ontology for clinical studies exploration and harmonization assessment2025 BMC Medical Informatics and Decision Making article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Komal Gilani, Marlo Verket, Hans‐Peter Brunner‐La Rocca, Enrico Nicolis, Katharina Marx-Schütt, Visara Urovi, +1 more
1citations -
CMEO: a metadata-centric ontology for clinical studies exploration and harmonization assessment2026 Figshare other Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Komal Gilani, C. Peters, Marlo Verket, Hans‐Peter Brunner‐La Rocca, Enrico Nicolis, Martina Colombo, +3 more
0citations -
CMEO: a metadata-centric ontology for clinical studies exploration and harmonization assessment2026 Figshare other Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Komal Gilani, C. Peters, Marlo Verket, Hans‐Peter Brunner‐La Rocca, Enrico Nicolis, Martina Colombo, +3 more
0citations -
scDecorr: feature decorrelation based representation learning enables self-supervised alignment of multiple single-cell experiments2026 Scientific Reports article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Ritabrata Sanyal, Yang Xu, Hyojin Kim, Rafael Kramann, Sikander Hayat
0citations -
scDecorr - Feature decorrelation representation learning with domain adaptation enables self-supervised alignment of multiple single-cell experiments0citations