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Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data2020 Genome biology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Christian H. Holland, Jovan Tanevski, Javier Perales-Patón, Jan G. Gleixner, Manu P. Kumar, Elisabetta Mereu, +6 more
367citations -
The Immunometabolic Atlas: A tool for design and interpretation of metabolomics studies in immunology2022 PLoS ONE article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Pascal Maas, Ilona den Hartog, Alida S. D. Kindt, Sonja Boman, Thomas Hankemeier, J. G. Coen van Hasselt
3citations -
OntoEditor: Real-Time Collaboration via Distributed Version Control for Ontology Development2024 Lecture notes in computer science conference-paper Computer Science Semantic Web and Ontologies
Ahmad Hemid, Waleed Shabbir, Abderrahmane Khiat, Christoph Lange, Christoph Quix, Stefan Decker
0citations -
Official Progress Report 2023-2025: NFDI Section (Meta)data, Terminologies, Provenance - Working Group Ontology Harmonization and Mapping2026 Zenodo (CERN European Organization for Nuclear Research) article Computer Science Research Data Management Practices Open access
Philip Strömert, A. Gerber, Ulrik Stervbo, Heike Fliegl, Damien Goutte-Gattat, Mark Doerr, +6 more
0citations -
Official Progress Report 2023-2025: NFDI Section (Meta)data, Terminologies, Provenance - Working Group Ontology Harmonization and Mapping2026 Zenodo (CERN European Organization for Nuclear Research) article Computer Science Semantic Web and Ontologies Open access
Philip Strömert, A. Gerber, Ulrik Stervbo, Heike Fliegl, Damien Goutte-Gattat, Mark Doerr, +6 more
0citations -
The COVID-19 epidemiology and monitoring ontology2021 Zenodo (CERN European Organization for Nuclear Research) conference-paper Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Núria Queralt-Rosiñach, Paul N. Schofield, Robert Hoehndorf, Claus Weiland, Erik Schultes, César H. Bernabé, +1 more
0citations -
REDCap Ontology Annotation Made Easy (ROME) – A REDCap Module for Simplified Metadata Element Annotation2026 Studies in health technology and informatics book-chapter Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Christof Meigen, Sophie Anne Inès Klopfenstein, Andrea Groselj‐Strele, Matthias Löbe, Jonathan M. Mang, Dustin Thewes, +1 more
0citations -
Gaining IIoT insights by leveraging ontology-based modelling of raw data and Digital Shadows2021 IEEE International Conference on Industrial Cyber-Physical Systems (ICPS) conference-paper Computer Science Semantic Web and Ontologies
Christian Brecher, Melanie Buchsbaum, Aleksandra Müller, Katrin Schilling, Markus Obdenbusch, Stefan Staudacher, +1 more
11citations -
The Cell Ontology in the age of single-cell omics2026 eScholarship (California Digital Library) article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Shawn Zheng Kai Tan, Aleix Puig-Barbe, Damien Goutte-Gattat, Caroline Eastwood, Brian D. Aevermann, Alida Avola, +29 more
6citations -
The Cell Ontology in the age of single-cell omics2026 Scientific Data data-paper Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Shawn Zheng Kai Tan, Aleix Puig-Barbe, Damien Goutte-Gattat, Caroline Eastwood, Brian D. Aevermann, Alida Avola, +28 more
0citations -
Report on the FAIR Semantics workshop to discuss ontology design good practices and evaluate the first recommendations and the roadmap (M2.6)2020 Zenodo (CERN European Organization for Nuclear Research) report Computer Science Semantic Web and Ontologies Open access
Wim Hugo, Yann Le Franc, Gerard Coen, Luiz Olavo Bonino, Jessica Parland-von Essen
0citations -
CMEO: a metadata-centric ontology for clinical studies exploration and harmonization assessment2025 BMC Medical Informatics and Decision Making article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Komal Gilani, Marlo Verket, Hans‐Peter Brunner‐La Rocca, Enrico Nicolis, Katharina Marx-Schütt, Visara Urovi, +1 more
1citations -
D5.2.2.1 Integrated NFDI4Energy simulation scenario ontology2026 Zenodo (CERN European Organization for Nuclear Research) article Computer Science Modeling and Simulation Systems Open access
Jan Sören Schwarz, Laura Fuentes Grau, Nan Liu, Zhiyu Pan, Ramiz Qussous, Philipp Schmurr, +2 more
0citations -
CMEO: a metadata-centric ontology for clinical studies exploration and harmonization assessment2026 Figshare other Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Komal Gilani, C. Peters, Marlo Verket, Hans‐Peter Brunner‐La Rocca, Enrico Nicolis, Martina Colombo, +3 more
0citations -
CMEO: a metadata-centric ontology for clinical studies exploration and harmonization assessment2026 Figshare other Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Komal Gilani, C. Peters, Marlo Verket, Hans‐Peter Brunner‐La Rocca, Enrico Nicolis, Martina Colombo, +3 more
0citations -
D5.2.2.1 Integrated NFDI4Energy simulation scenario ontology2026 Zenodo (CERN European Organization for Nuclear Research) article Computer Science Modeling and Simulation Systems Open access
Jan Sören Schwarz, Laura Fuentes Grau, Nan Liu, Zhiyu Pan, Ramiz Qussous, Philipp Schmurr, +2 more
0citations -
Work-in-Progress: A Review of the Type, Breadth, and Limitations of Publicly Available Educational Technology Products in 20222024 ASEE Annual Conference & Exposition conference-paper Computer Science Educational Technology and E-Learning
Robert M. Nickel, Sarah Appelhans, R.L. Thomas, Stu Thompson, Stewart J. Thomas, Abdelghany Abouelnagga, +1 more
2citations