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The Network Zoo: a multilingual package for the inference and analysis of gene regulatory networks2023 Genome biology article Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access
Marouen Ben Guebila, Tian Wang, Camila M. Lopes‐Ramos, Viola Fanfani, Des Weighill, Rebekka Burkholz, +19 more
56citations -
The Network Zoo: a multilingual package for the inference and analysis of biological networks2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access
Marouen Ben Guebila, Tian Wang, Camila M. Lopes‐Ramos, Viola Fanfani, Deborah A. Weighill, Rebekka Burkholz, +17 more
1citations -
scMEGA: single-cell multi-omic enhancer-based gene regulatory network inference2023 Bioinformatics Advances article Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access cited by 1 patent
Zhijian Li, James Shiniti Nagai, Christoph Kuppe, Rafael Kramann, Ivan G. Costa
41citations -
scMEGA: Single-cell Multiomic Enhancer-based Gene Regulatory Network Inference2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access
Zhijian Li, James Shiniti Nagai, Christoph Kuppe, Rafael Kramann, Ivan G. Costa
0citations -
Systematic Evaluation of Normalization Methods for Glycomics Data Based on Performance of Network Inference2020 Metabolites article Biochemistry, Genetics and Molecular Biology Glycosylation and Glycoproteins Research Open access
Elisa Benedetti, Nathalie Gerstner, Maja Pučić‐Baković, Toma Keser, Karli R. Reiding, L. Renee Ruhaak, +11 more
22citations -
Optimizing Binary and Ternary Neural Network Inference on RRAM Crossbars using CIM-Explorer2025 arXiv (Cornell University) preprint Engineering Advanced Memory and Neural Computing Open access
Rebecca Pelke, José Cubero-Cascante, Nils Bosbach, Niklas Degener, Florian Idrizi, Lennart M. Reimann, +2 more
0citations -
A novel metric to measure spatio-temporal proximity: a case study analyzing children’s social network in schoolyards2023 Applied Network Science article Physics and Astronomy Complex Network Analysis Techniques Open access
Maedeh Nasri, Mitra Baratchi, Yung‐Ting Tsou, Sarah N. Giest, Alexander Koutamanis, Carolien J. Rieffe
5citations -
Trans-dimensional Bayesian model averaging for 13C-metabolic flux analysis: evidence-based flux inference under structural model uncertainty2026 Bioinformatics article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Johann F. Jadebeck, Anton Stratmann, Martin Beyß, Katharina Nöh
0citations