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MIXed Plastics Biodegradation and UPcycling Using Microbial Communities: The EU Horizon 2020 Project MIX-UP2021 Research Square preprint Materials Science biodegradable polymer synthesis and properties Open access
Hendrik Ballerstedt, Till Tiso, Nick J. P. Wierckx, Ren Wei, Luc Avérous, Uwe T. Bornscheuer, +22 more
1citations -
Metagenomics Combined with Activity-Based Proteomics Point to Gut Bacterial Enzymes that Reactivate Mycophenolate2022 medRxiv preprint Pharmacology, Toxicology and Pharmaceutics Pharmacogenetics and Drug Metabolism Open access
Joshua B. Simpson, Josh J. Sekela, Amanda L. Graboski, Valentina Borlandelli, Natalie K. Barker, Alicia A. Sorgen, +8 more
6citations -
Unraveling interindividual differences and functional consequences of gut microbial metabolism of immunosuppressants2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Maral Baghai Arassi, Nicolai Karcher, Eleonora Mastrorilli, Matthias Groß, Amber Brauer-Nikonow, David Czock, +3 more
6citations -
Genome Mining and Pangenome Analysis of the Stutzerimonas Genus: a Novel Source of Plastic-Degrading Enzymes2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Enzyme Production and Characterization
Anna Luiza Bauer Canellas, Mauro de Medeiros Oliveira, Yeda Idalina Ilheo Rodrigues, Bruno Francesco Rodrigues de Oliveira, Nathália Ferreira dos Santos, Maria Alice Zarur Coelho, +2 more
0citations -
Synergistic biodegradation of polyethylene by experimentally evolved bacterial biofilms2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Environmental Science Microbial bioremediation and biosurfactants Open access
Shan Li, Jiajia Liu, Jingwen Qiu, Lian‐Bing Lin, Ákos T. Kovács, Yicen Lin
1citations -
Assessing the validity of a calcifying oral biofilm model as a suitable proxy for dental calculus2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Dentistry Oral microbiology and periodontitis research Open access
Bjørn Peare Bartholdy, Irina M. Velsko, Shira Gur-Arieh, Zandra Fagernäs, Christina Warinner, Amanda G. Henry
1citations -
A physiologically-based model of bile acid metabolism in mice2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Drug Transport and Resistance Mechanisms Open access
Bastian Kister, Alina Viehof, Ulrike Elisabeth Rolle-Kampczyk, Annika Schwentker, Nicole Simone Treichel, Susan A. V. Jennings, +6 more
2citations -
Genome-guided isolation of Fervidibacter sacchari, an aerobic, hyperthermophilic polysaccharide-degrading specialist2024 Research Square preprint Environmental Science Microbial Community Ecology and Physiology Open access
Brian P. Hedlund, Nancy O. Nou, Jonathan K. Covington, Dengxun Lai, Xavier Mayali, Cale O. Seymour, +36 more
2citations -
Asymptomatic gut colonization by extended-spectrum beta-lactamase-producing Escherichia coli is not associated with an altered gut microbiome or metabolome in Dutch adults2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Quinten R. Ducarmon, Romy Daniëlle Zwittink, Roel P J Willems, Aswin Verhoeven, Sam Nooij, Fiona R.M. van der Klis, +6 more
1citations -
Ecologically inspired assembly of a Bacillales synthetic community for lignin degradation2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Engineering Lignin and Wood Chemistry Open access
Qing Zhou, Xingchen Xin, Chao Du, Youri Meelkop, Sebastiaan N. J. Laan, Joost J. Willemse, +6 more
0citations -
Characterization and Crystal Structure Elucidation of the L-Homoserine O-Succinyltransferase MetXS from Cupriavidus necator H162026 ChemRxiv preprint Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Hannah Pia Franziska Meier, Rick Oerlemans, Henrik Terholsen, Matthew R. Groves, Lars Lauterbach, Sandy Schmidt
0citations -
Promiscuous NAD-dependent dehydrogenases enable efficient bacterial growth on the PET monomer ethylene glycol2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Microbial metabolism and enzyme function Open access
Minrui Ren, Danni Li, Holly Addison, Willem E. M. Noteborn, Els H. Andeweg, Timo Glatter, +4 more
3citations -
Metabolic engineering of Corynebacterium glutamicum for the production of anthranilate from glucose and xylose2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Mario Mutz, Vincent Brüning, Christian Brüsseler, Moritz‐Fabian Müller, Stephan Noack, Jan Marienhagen
0citations -
Genomic and metabolic plasticity drive alternative scenarios for adapting Pseudomonas putida to non-native substrate D-xylose2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Pavel Dvořák, Barbora Burýšková, Barbora Popelářová, Birgitta E. Ebert, Tibor Botka, Dalimil Bujdoš, +6 more
0citations -
Integration of machine learning and pan-genomics expands the biosynthetic landscape of RiPP natural products2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Microbial Natural Products and Biosynthesis Open access
Alexander Kloosterman, Peter Cimermančič, Somayah S. Elsayed, Chao Du, Michalis Hadjithomas, Mohamed S. Donia, +3 more
5citations -
Implementation of the β-hydroxyaspartate cycle increases growth performance of Pseudomonas putida on the PET monomer ethylene glycol2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Lennart Schada von Borzyskowski, Helena Schulz-Mirbach, Mauricio Troncoso Castellanos, Francesca Severi, Paul A. Gomez Coronado, Timo Glatter, +3 more
1citations -
RB-TnSeq elucidates dicarboxylic acid specific catabolism in β-proteobacteria for improved plastic monomer upcycling2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Environmental Science Microbial bioremediation and biosurfactants Open access
Allison N. Pearson, Graham A. Hudson, Jacob B. Roberts, Javier Menasalvas, Aaron A. Vilchez, Matthew R. Incha, +6 more
1citations -
Adaptive laboratory evolution rewires Pseudomonas putida for resource-efficient acetate assimilation2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Nicolás Gurdo, Aparajitha Srinivasan, Tommaso Tagliani, Melanie Filbig, Nicolas T. Wirth, Josefin Johnsen, +13 more
0citations -
Chemoproteomic mapping of active glycan-processing networks in a defined gut microbiome2026 ChemRxiv preprint Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Isabelle B. Pickles, Thamy Lívia Ribeiro Côrrea, Qinnan Yang, Yurong Chen, Zirui Li, Nicole M. Koropatkin, +3 more
0citations -
Enhanced niche colonisation and competition during bacterial adaptation to a fungus2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Evolution and Genetic Dynamics Open access
Felix Blei, Guohai Hu, Jan W. Schwitalla, Carlos N. Lozano-Andrade, Scott A. Jarmusch, Mario Wibowo, +13 more
2citations -
Grasping the constraints of pure bacterial strains for the complete catabolism of micropollutants: a proteomic and kinetic study2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Environmental Science Pharmaceutical and Antibiotic Environmental Impacts Open access
Ana P. Lopez Gordillo, Alba Trueba-Santiso, Kilian E. C. Smith, Juan Manuel Lema
0citations