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Combining Knowledge About Metabolic Networks and Single-Cell Data with Maximum Entropy2025 conference-paper Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Carola Sophia Heinzel, Johann F. Jadebeck, Elisabeth Zelle, Johannes Seiffarth, Katharina Nöh
0citations -
Genome-scale metabolic network of human carotid plaque reveals the pivotal role of glutamine/glutamate metabolism in macrophage modulating plaque inflammation and vulnerability2024 Cardiovascular Diabetology article Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases Open access
Han Jin, Cheng Zhang, Jan Nagenborg, Peter J. Juhasz, Adele V. Ruder, Cornelis J. J. M. Sikkink, +8 more
20citations -
fluxTrAM: Integration of tracer-based metabolomics data into atomically resolved genome-scale metabolic networks for metabolic flux analysis2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Luojiao Huang, German Preciat, Jesús Alarcón-Gil, Edinson Lucumi Moreno, Agnieszka B. Wegrzyn, Ines Thiele, +4 more
1citations -
Mixed-Integer Optimization for Loopless Flux Distributions in Metabolic Networks2024 arXiv (Cornell University) preprint Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
João Dionísio, Tim Donkiewicz, Leon Eifler, Ambros Gleixner, Katrin Halbig, Ivo Hedtke, +9 more
89citations -
The Network Zoo: a multilingual package for the inference and analysis of biological networks2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access
Marouen Ben Guebila, Tian Wang, Camila M. Lopes‐Ramos, Viola Fanfani, Deborah A. Weighill, Rebekka Burkholz, +17 more
1citations -
Modelling Circular Structures in Reaction Networks: Petri Nets and Reaction Network Flux Analysis2020 Computer-aided chemical engineering/Computer aided chemical engineering book-chapter Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction
Jana M. Weber, Artur M. Schweidtmann, Eduardo Nolasco, Alexei A. Lapkin
8citations -
Abstract LB-184: A lncRNA-histone acetyltransferase complex induces colorectal oncogenesis through regulation of a metabolic kinase network2020 Cancer Research conference-abstract Biochemistry, Genetics and Molecular Biology Cancer-related molecular mechanisms research
Christos Polytarchou, Maria Hatziapostolou, Μαρίνα Κουτσιούμπα, Niki Christodoulou, Tung On Yau, Eleni Birli, +7 more
0citations -
A Biological-Systems-Based Analyses Using Proteomic and Metabolic Network Inference Reveals Mechanistic Insights into Hepatic Lipid Accumulation: An IMI-DIRECT Study
Natalie N. Atabaki, Daniel Coral, Hugo Pomares-Millan, Robert Wilhelm Koivula, Andrea Tura, Katherine E. Pinnick, +53 more
2citations -
Analysis of B-Scan Ultrasonography Using Neural Networks to Predict Risk of Fibrosis in Patients With Metabolic Dysfunction-Associated Steatotic Liver Disease (MASLD)2026 Ultrasound in Medicine & Biology article Medicine Liver Disease Diagnosis and Treatment Open access
Josefine Stansch, Kien Vu Trung, Valentin Blank, Jakob Nikolas Kather, Moritz Herzog, Tobias Seibel, +5 more
1citations -
Exploiting Natural Variation in Tomato to Define Pathway Structure and Metabolic Regulation of Fruit Polyphenolics in the Lycopersicum Complex2020 Molecular Plant article Biochemistry, Genetics and Molecular Biology Plant Gene Expression Analysis Open access
Takayuki Tohge, Federico Scossa, Regina Wendenburg, Pierre Frasse, Ilse Balbo, Mutsumi Watanabe, +10 more
108citations -
Trans-dimensional Bayesian model averaging for 13C-metabolic flux analysis: evidence-based flux inference under structural model uncertainty2026 Bioinformatics article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Johann F. Jadebeck, Anton Stratmann, Martin Beyß, Katharina Nöh
0citations -
Trans-dimensional Bayesian model averaging for $^{13}$C-based metabolic flux analysis: Evidence-based flux inference under structural model uncertainty2026 arXiv (Cornell University) preprint Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Johann F. Jadebeck, Anton Stratmann, Martin Beyß, Katharina Nöh
0citations -
XomicsToModel: Omics data integration and generation of thermodynamically consistent metabolic models2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
German Preciat, Agnieszka B. Wegrzyn, Ines Thiele, Thomas Hankemeier, Ronan M. T. Fleming
10citations -
European survey on metabolic and cardiovascular risk in Cushing syndrome2025 Journal of Endocrinological Investigation article Medicine Pituitary Gland Disorders and Treatments Open access
Alessandro Mondin, Mattia Barbot, Filippo Ceccato, Alberto M. Pereira, Anna G. Angelousi, Atanaska P. Elenkova, +17 more
2citations